Scaffold Ga0136709_1012487

Overview

Basic Information

• Taxon OID: 3300011184
• Scaffold ID: Ga0136709_1012487
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1199
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F030690	Metagenome / Metatranscriptome	184	N
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136709_10124871	F002037	GGA	MSKTYWVFIVVLAALAIWGTEKAMGQTTTILAPDGSVTVCQVYNGTVICV*
Ga0136709_10124872	F093530	N/A	VSNAMRNAYASHTDFGFLRGVILENPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVDKFYKVTQDKLVILGNGIEGLKDYIDAWYQSSNGVSSP*
Ga0136709_10124873	F030690	AGGA	MQRSDVEIICNHMLGRVIVSCEALHGDSTIVIQLDDDSYIEISGGEDLSVYGELTPLDD*