Scaffold Ga0151672_100275

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_100275
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29366
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002629	Metagenome / Metatranscriptome	542	Y
F006815	Metagenome / Metatranscriptome	364	Y
F015148	Metagenome / Metatranscriptome	257	Y
F054158	Metagenome / Metatranscriptome	140	N
F076259	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_10027521	F006815	N/A	MGTNYSQETAQSIIEQYRFRVEALSNKIEELKAKIEVSQINKQNG*
Ga0151672_10027523	F054158	N/A	MILKENKMRKIKKPLNDKIKFIPCNENRLIYSYTRTDKKSTRFEKLNK*
Ga0151672_10027531	F076259	N/A	MSQFEKLGYFLEYMIDDNYIGSTILENPDREQIGYYGRIDEVATEDIIFKNKKRIKKGQSFYTRMYPLCGKYLNK*
Ga0151672_10027533	F002629	N/A	MRVNEAAWEKLKKQIEYHTEADTSISDISINYQVKETKNRNYLRFNITIDKWDKITE*
Ga0151672_10027549	F015148	N/A	MDWYSPPEYKEYECSECGAEIDSPGVCSGTCHEASMI*