Scaffold Ga0151669_106009

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_106009
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3414
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016322	Metagenome	248	N
F017401	Metagenome	241	Y
F030152	Metagenome	186	Y
F081761	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10600910	F030152	AGGAG	MKITKAAIQALATQSVKEQYARETDKALYLEEIIVLAGFDISLTDRPDQWDRCIEWLENAV*
Ga0151669_10600911	F016322	GGCGG	MIRDTNHPLFDEVAYAHVHARAQVLADKANRVGWEEIIDSSAMAIRAMMLRMNTKRLRNDTFYAGVIDGQLGVIVRKGAKH*
Ga0151669_10600912	F017401	N/A	MATPAGQPQVNKDNQLCRKLGTLARTDAYVPQCVERESSNFLTIVLEFIAVLAIMLTSIIAAWCVAVIL*
Ga0151669_1060094	F081761	GAG	VTTEKVIPLHNPHSEIDQQWLALERQQQQIREQLEKILEQKR*