Scaffold Ga0151669_103712

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_103712
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13604
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015946	Metagenome	251	Y
F027349	Metagenome	195	N
F053631	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10371218	F015946	N/A	MNNRIFPDKAFTSFEHGWEYIYSKFDNEQDHQEYYVVDINQKERGQI*
Ga0151669_10371220	F053631	AGGCGG	MIRAIYFSLCFGLALLGLFVITHINLTLGLSMFALFIVKFLLMIPSTERG*
Ga0151669_10371223	F027349	AGG	MKVWNIRVTDRNGFDSYSFFQEDEPTNQQLETIKKIYQNSGRYFPEDIEDIDVEIKGNFDNQNIPTYDQLIDHLKDKYKIIK*