Scaffold Ga0151669_100328

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_100328
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013592	Metagenome	270	Y
F043408	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_1003282	F043408	N/A	MKVRKEISLTVETAQIANKMKNFSQWVRIGLRQYQHGEDVASETMRRMRYRKACVHLASALIDYATQIDPDYKGEVEVIIAQAMNQTTLEEFE*
Ga0151669_1003286	F013592	N/A	MLIDMLSPELLWLEELLFEDSAIPLTTLAKFHPLVRIPIMAFQAADIVATELAFRTIEAGGAGAINLFTPEIRRYEDTALVGMGGMVI*