Scaffold Ga0151663_1000341

Overview

Basic Information

• Taxon OID: 3300011125
• Scaffold ID: Ga0151663_1000341
• Source Dataset Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2425
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36023
  • Long. (^o): 137.9591
  • Depth (m): 570

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F019836	Metagenome / Metatranscriptome	227	Y
F061271	Metagenome / Metatranscriptome	132	N
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151663_10003412	F019836	N/A	MQKAKLELPVKQFHQLYDLLGDILDYESENGDFNMENLDIDLLEDIRTELFNQIPDEKTYTDYALTGRSSNPRIQPGKLYKIVEKSSKYGFKLEVEDGKVIYCLFKNCAFLNGRDWTIINVED*
Ga0151663_10003414	F061271	N/A	MEELDRVVHQWCDNNDRWMYIEYDRDGKVMGLNFMQGDEYECFKRDWCVSDKGLTAFYKQMLYTFAYEQGNVPEHCFINSCMWAYHAAISEYEHNNCEIGNATKCYKKQCCR*
Ga0151663_10003415	F092077	N/A	MTEELSPLQRSFDRINELIPDNSDVMLRCSLYEMCVELTTESFSEGINTKY*
Ga0151663_10003416	F005129	N/A	MHNSVIDLGICTVKATTHTFLFEAKDTDWGADINETELEFYVNNKRCKYVGFKELYTQLYGNSFATFEADLIRQIEEEVAKKIVKEYPGTDVNF*