Scaffold Ga0114922_10006712

Overview

Basic Information

• Taxon OID: 3300011118
• Scaffold ID: Ga0114922_10006712
• Source Dataset Name: Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10546
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Aarhus Bay
• Coordinates
  • Lat. (^o): 56.103
  • Long. (^o): 10.458
  • Depth (m): 27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F077223	Metagenome / Metatranscriptome	117	N
F089995	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114922_1000671213	F003687	AGGA	MSPSSVEHLLTQKARLLARRESPAIDKELEDLRQAALEIFYQWQDGLVQFQDLTPFVAILEKKVDLNRTLIKWEQDHIS*
Ga0114922_1000671216	F001806	GGA	MDAGVRQKRVEALEKIKEHALERAKEGADSFEVRDFVTSAKKELAYELPDEEAFKKAVRATQAYKGSKEN*
Ga0114922_100067122	F077223	N/A	MSFLAAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEMRYVRNSEQLALQGQPQPDGSWKYVEPNGCVHTMSAERAQSFMQQTHEHANIMCTMLDRLREAGLMENIVDTEAQAV
Ga0114922_100067126	F089995	N/A	MQMVAKMKESADKHGVGFVGGFVSPDGKKFMMTNMSQEDTQFLLPDDLK*