Scaffold Ga0151516_11310

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_11310
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10226
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009603	Metagenome / Metatranscriptome	315	N
F050365	Metagenome / Metatranscriptome	145	N
F061802	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_113102	F050365	N/A	MTQSEYVKHSGLTKGRVSQLCSQGMPLTSPEDADAWRGSRKGIGGRPSQQRLIESQQQESKFQEAAESISDGPYRPPEASATVNPSLVALDTPAGAYERQKQIERASYGLAVQALRNKTMDAGRMVTVHASAAKNLINARQDVLALAEKEKTLVSGSWVKKVMMDHDGSVAQLLKSMPKQLAGRIAPHDPEHAERELERWVQDVCLKTLHSTNPWK*
Ga0151516_113104	F061802	AGG	MEILNCQKPKGLEALRQNKIALKAIEQQTVIRFLPIADDKPSRIDGFIHDTISGLIVGSYEVKTRNYSKAKLETTYKNEWMISWSKIQAALDITKHTKLPFYGILHLEPDNLVMMLEIFNSNGTWGCNTQMRDVLMDGVTQKMAFLNMGDAVSYAISDSNALLEPHLF*
Ga0151516_113106	F009603	N/A	VLTYTVATKRSYLRTTYASKAALTLLEALTAKLTVVANTLESGQVVRSTSSSDVSVEFAEPGKGSASAGEMLEMWESLLSDYDLAVTLLAGDGIANPSDLQIYNKMLGTILVSTTRYYGDFTQFRREATTRMS*