Scaffold Ga0151516_10469

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10469
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19844
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F034904	Metagenome / Metatranscriptome	173	N
F036666	Metagenome / Metatranscriptome	169	N
F042808	Metagenome / Metatranscriptome	157	N
F072266	Metagenome / Metatranscriptome	121	N
F083941	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1046911	F036666	N/A	LRETAQGARILAEWLGDGGTPVDRQLAQARIDTCNRCLHNKPTDARSITKTVAEAILEQEQARHDMVMFLHGEGLAGTCDVCGCYLKLKVWVPLSYIGDQKMPDNCWISRETNPT*
Ga0151516_1046915	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFDDPTVVYNGGYYNAAVETAFKEGQFQGCGTYIADDTDPFLFASIGGKVFQIDINNGFKVTDLTPINFTFQVLTRGRVSNVATYVCGAPHGLSPGMVVRLPEPPGAFFPEGFFGDFIVETVPSPTTFTTYSPGIDAGPLLGPAFNAYQMATNNPQASHVFFQQAENWLVIQDGQNQPYLYNGSTLRRATGDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVPVNGDLIFRAQDGIRSLVYARRDFTEFGNTPISRQVVRALAYDTEFYLTAASAVNFDNRMLMTIQPRKVNNRGIVHNGMVVMDFDLVSGMGRKLPPAWEGVWTGVDVFQMVTIRVKRSDRCFVFGLNQDYIGLYEITKNGQFDFDGFDDAPIEWTIETRSLTFAEPANKKRLVSADQWYDQVMGNIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLSA*
Ga0151516_1046918	F034904	GAG	MRKTLAQAKNSTIPQAVGLATCDDRFVQLLNEAQERLSEMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVYQYRDFTGASKIRVYPQLTADAGKRVLLQGLDAGTGQPIRTLDAVTGEYVWGEYVTLPNPAVTAYVETVNTFKMPGLTGAQKPLTQGSLTVVAYNTTTFVQTQIAIWGPSEQNPEYRRTYLINMPEVCGGTQGCNNGNDNCCIDHGDGCVPPDESCTNTVVEAIVRLEFIPAVVDSDWLFIGNLQAVKHMMKAIQKEDRNQYQEAEREIQLALRALRNELEAYSPNERSVINVQPWGSAKIEYRFGGFI*
Ga0151516_104693	F083941	N/A	MPEETQHNLEVRIVRLETIIGDKDAGMVSDIHGIKSTLEGLKQFQWKLFGGLGVLVVLAQLLGRIGLK*
Ga0151516_104695	F002621	AGG	MHQNLSRLIWLIVLPICLGCQTKVILVPNGDPVLLAEPVCAKVYAFDREGNLSGPATVKIPAGWYALPKTK*
Ga0151516_104699	F072266	N/A	MIPTPKQEFQRDKARLRTVEQMLESTELQAALLAAFNNFCWNLPPSENPQHGWNANCKRAGARAFLEELKGLVDVREPKKTQTQNLE*