Scaffold Ga0151516_10334

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10334
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25037
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (39.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001806	Metagenome / Metatranscriptome	631	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1033412	F001165	N/A	MPDNTPRIPDSIDMQRLSAMQLVAKMKESADKCGVGFVGGFIAPNGEKFMMSNMSDEDTQFLLPDDLK*
Ga0151516_1033424	F001806	N/A	MDAGTRQKRVEALEAIKNKAVNMAKEGRDSLEVRDFVTSAKKELAYELPDEDAFKKAMNATLAYKAKKGE*
Ga0151516_1033427	F002721	N/A	MAKDARLDLGRYIQNPFNRRGEIGKRLDFDDLFRAKPETGDYPWNPSRFNERDLLKRSMTRKVTLNPDLNFVSNTPFFDTKNLDQNYQVFEGLGRFNRPMDYDFNEGRARTPQRPQDQPDFNPEWIEAYKISPTMNPGNAAKNPMPRLRNPDPNGYLMAIAEKRAENEVEDKPSIAQLLDRQGLIKKEQAQAEVNQGEQTADEEPIEANNAPRKD*
Ga0151516_103348	F001807	N/A	MTVLAIEDTFIDGSDVTVTAVVEDMRLLYRATHYEPEEWAPALCSATFQLDEGEQIPLDEDGFCSYLDSLDLYWQLVDTSDYDVD*