Basic Information | |
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Taxon OID | 3300011116 Open in IMG/M |
Scaffold ID | Ga0151516_10129 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 40654 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (81.54%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010680 | Metagenome / Metatranscriptome | 300 | Y |
F045716 | Metagenome / Metatranscriptome | 152 | N |
F053297 | Metagenome | 141 | Y |
F066716 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151516_1012921 | F066716 | GAGG | MAKAKENNFQVSATGGAGTNGQPARYAAGIDNAQDFYDMQTQAKMSGQNPANNLKVSTEPTIPRMDTTGIVPLNAPTQFPDEGLDTGGIAGPNAGEEVMAAPAMLRAQNNQDIAQLAAYLPFYAKIAESPQASNAMRNWYRYVRSQVEGV* |
Ga0151516_1012948 | F010680 | N/A | MSQEEVRICTLLAVERWLAKFGSTDRPNYAAGKKYGKLEPEINANIRANVAEWAVAREYNLSWSVPWYPNELHNKRKNIPDVGDFEVRTVRTQNAIPFWKKDAGRTIFGVKVLDEEYYSMVEIYGSFEANDFMKDEFFDSSIDGWRVPIDLIVGANDG* |
Ga0151516_1012955 | F045716 | AGGAG | MSENTPIQINFKTKKDGMLINLRAADGAELDLLMTQISERLAALVDLEKTVEGMAVVKNAFPTAQVVGSAPTATPSAGTPECACGGGAMRFVPAGIAKSTGRPYKAFYACPKPQGQACQNKVPA* |
Ga0151516_1012962 | F053297 | GGAG | MTKSKPQIKIVNVETGEEIVRDANAEEIAQMEIDAANALARKTEEEAKAQAKAQLLAQLGITEEQAKLLLS* |
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