Scaffold Ga0151514_10709

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10709
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14024
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005451	Metagenome	400	Y
F010080	Metagenome	308	Y
F014136	Metagenome	265	Y
F023340	Metagenome	210	N
F043924	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1070914	F005451	N/A	MTNRPYPYYPSWDGKQTQPVTAKLVELCGKRWGTKSLGTYANRAMRNGAGLSVHATGYAADIQYKDEAQARIIWDWFLANSKALGLCELHWYAYGTYGAGYRCSRGEGKAGVKIYTADDNAGSYEGNPNWLHFEMANQTAEAFEAAWRALPKP*
Ga0151514_1070915	F023340	GGA	MLALHQDNEQQTMIPTWGYMPLWSKDKLTLVQIFTDSATEEIVKVTVARRQAPWMTFASITEVEQVD*
Ga0151514_1070917	F014136	GAGG	MELTTDEIIARLMNLSVKLDGEMRFEEGSTVSQAIALIMTMRNATERLRHPSMSNNNDELRQVIEWIVENPS*
Ga0151514_1070921	F043924	AGG	MRTPVRVILNDADMQIAAHGGVNRRLLAIKRADRPNQPNRKYHEQNWFQTDVFGAIGEYAVAKLLGVEWHWEQEANGFDVLQYQVRSTENPDTTIKVRTRDNPDHNFIFCKVRENRVLIEGWITGREVIDNNDEIFPDCFTIKDYRLYPLTDLPEFPQTLPAGCEMYKPPVKRLGTQS*
Ga0151514_107098	F010080	N/A	MTTNTTIEIQGLKEAIRSLNKVEPGLRKQFVQDASRIAQPAIQEVQRNYALIKVPLSGMDRNWTQNGKKIFPFSVARAISGVKLKVDASREATSLIYITQTNVAAAVFEAAGRTNKNNLGDSLGRLRPGTTRILGPAVFRKRKEIEREMLKASMDAIRLVQRELD*