Scaffold Ga0151514_10670

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10670
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14457
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016803	Metagenome / Metatranscriptome	244	Y
F023096	Metagenome / Metatranscriptome	211	N
F025727	Metagenome / Metatranscriptome	200	N
F076931	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_106701	F016803	AGAAGG	MISFIAKLRAAWTFTRHQRWVDPLPWSKPDAITLNNFFKSETGKKFKDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMA
Ga0151514_1067016	F023096	N/A	MKSSTHDLVNALNIISAELDTPDGIPNALCAEASSRLLELVQLTSDLTAHIISNPVHHGRCNAKTKGNYCNCILARLITP*
Ga0151514_1067017	F025727	N/A	MSRHSFPLVESIKVVRLSEGRTIRVLRDRTKDNLKVIHGDGDIHLTCVAQAHDPIEMIKTLAKLEDVRSVELVDSKGNGIVIHKQK*
Ga0151514_106707	F076931	N/A	MVLYGSRHFFDLCGEVAFFRGEMLAMAMGKTKQVPGDKTVNVLGENQEKKKVGRPLKALSADTTKKAIEAARLGIPLERIAIGCGFFDGGQGWQLYLARNQEFANAIKQAQFEGELELTSVVRQCGNGWQGSAWLLERTRGYVARASLEHTGKGGKELSISGSLLGAFGGQAK*