Scaffold Ga0151514_10530

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10530
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16413
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F011282	Metagenome	292	Y
F100352	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1053016	F100352	AGGA	MPNYAIIENGKVINTVVAETDYAVTRGWVELTSGGIDWDYVNGQFVDNRPVPEVVTAPAPTKEQLMTELSALTAKIEALT*
Ga0151514_105306	F011282	N/A	MKKYKNIVVITGTYKTKDGQEKKRYQTIGSVFLDDNDNLKIKMDSMPLLDGGWNGWANCYDLEEKTNKQEDRNDGQIPF*
Ga0151514_105309	F002420	AGGGGG	MTFRETTIKYIKDILRAKTISEVIYAELQEAHLRKLEAETAAEYANAAMQYNQERIQRLEKRLFIHKQEDK*