Scaffold Ga0151514_10455

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10455
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17942
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (89.74%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F014358	Metagenome	263	Y
F034071	Metagenome / Metatranscriptome	175	N
F034467	Metagenome	174	Y
F034855	Metagenome / Metatranscriptome	173	Y
F038590	Metagenome / Metatranscriptome	165	Y
F049487	Metagenome	146	Y
F053072	Metagenome	141	Y
F070994	Metagenome	122	Y
F075680	Metagenome	118	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1045512	F034855	GGAG	MSERIDNALALADKCWSKANRVSPEFVERYLELAEELLASKPVVLGDEFREYCGKKLLFRPKELHPNVWVSGVRTLSTLGWIAHNGYTTPTKSHNHMPSVSVWKSMIYGNDT*
Ga0151514_1045514	F007519	N/A	MTTGIENLKPEQQRKGRGLGKKPSLFCTSLRLPKDVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS*
Ga0151514_1045517	F034467	AGGAG	MKEEIKYSSKAIPLRGCNDPKFKWVSAASTDIRRTFRKARLLIRITNGAAYESRT*
Ga0151514_1045518	F080867	AGGAG	MNTLSLSNVVVGEDLQKSLDKEGLKLTGVFGMLDPVVSRLASLNPLWTFVINSSGLGTGSNRVASGFSVKLDGEELGTIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPNERISKAKDAAERIVTRASWNKERERTTHQSLVKNEMLAWVETKGHDMFMKFIKVEAIPSLKHKVITSMEKVELLDTEMKTIERVQKDFSDNKTALVVKDSGKYLVKIGDKVDLYDDNTLPVNMRMKMGMLKLVEDEQYLTDVGCKVSSEIFVLLVDELTNVSEGV*
Ga0151514_1045520	F053072	AGGAGG	MVVVDIGYRKLVMTKEKAMALVECLESAEVYEEKYWSDEKRKEKGMDSTYTYHVYPNEAHFGMSIVSDSHFQMAKLAGKPIKE*
Ga0151514_1045522	F075680	AGGAG	MGYRSDVVAVFYTQDPNEFPSIKLFIDEHVPEWFRGDKYMTTFTGNNNLQGIKFDLQDVKWYESYPDVQGFEQALNKFEKLADGGDKWLWEFVRIGEEVEDVEERSCSEAHNLIYVSRSIECDF*
Ga0151514_1045523	F070994	GAG	MLGMNGMTATDFKRYIVRWVTDHIKNESGTAQIQVLGYCVYDTKECKTLFEHKDKQVCEKVLTMILEGEGNGIQK*
Ga0151514_1045528	F049487	GGAG	MPRRKKKYILLRGYSGRFIVVRREWYDLKGIAKQRGDRKQWWIVTESDDRGAMHAMAGLSGRYLKMEVNHEQDGVVTRRE*
Ga0151514_1045531	F038590	AGGAG	MTTRPRHVKVDRLTKRVTQTDYLQMLGEAMKFARVEESKPVLNARELPIQTKREVK*
Ga0151514_1045534	F014358	AGG	MLDLDWKECSDCKDEIPIERHQAFCIFCEQDRERSAGEERSSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG*
Ga0151514_1045538	F034071	AGAAGG	MTTTVIVSSAIDTGILSIARNALVEGVTKTGVVIDNYSNAIASVFDRKDTNGKIIAKWFDLDGKEAKGIKLEKSLFANTLMDRDAKFIKEIKTNADGTVTRVHTATVDTYWQRVKVASGYVPKGKLKGSSDVDAKTQAELKTMINRILGAEEAGQECHASMILENLKNSYFVLTGEAYNADK*