Scaffold Ga0151514_10202

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10202
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29285
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (74.51%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004305	Metagenome / Metatranscriptome	444	Y
F020493	Metagenome	223	Y
F039599	Metagenome / Metatranscriptome	163	Y
F046202	Metagenome	151	Y
F048114	Metagenome	148	Y
F077007	Metagenome / Metatranscriptome	117	N
F078231	Metagenome	116	Y
F082122	Metagenome	113	Y
F102518	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1020213	F082122	AGGAGG	MREETLLEKFAIGIMFIAALLLMVWVPDFTLSQEDCAKQSSYAYVDNLCSQSKTN*
Ga0151514_1020230	F020493	GAG	MFWCIAMWITFCGFLIYLTELSRKEEVYKLNCELLLGGWHPDIPKEFAKFCEEAKRTMRSDR*
Ga0151514_1020232	F102518	AGAAGG	MKTILLLVVSVLVGCSSPRVVEGPIYTTQNLVMDRNIQPLTRGEQIDAIKDCQEVGLRPRLVYGKRLVNGYTAETVIDVICANRYAF*
Ga0151514_1020234	F046202	AGGAG	MFNTFGEFFWAFMAMSGFMFWICMVGFIAMVIKRNRAKRKVYYE*
Ga0151514_1020235	F078231	GAG	MKTEPELIDIFAMFALDRLKPVKGMSKIDVAYEAYEQAQAMMEVREDFINKRNE*
Ga0151514_1020238	F048114	GGAGG	LTGLISGKRVWNEGEGDDEHRHRCLVRGIIKMRMKDRQEAHVWLNGGMGKDGKYFKGWNALHPESRLEADIREQWAKGNRGQDGEWK*
Ga0151514_1020245	F077007	N/A	MKLMRNQYATHVDFFQFKGLIETNPKATPCNIDMVFERKCKFFVGEWKRDGEGMSQGQGLLLRNLARQPQFTVVIIQGNTDGDTVVEKFEQLCSDGRFRVRGKSFDDLKKFVTRWYKWADAQEFQ*
Ga0151514_1020247	F039599	AGGAG	MLSEETVKQIFFQSDRPRKDALLADEIDILQFAHNIELYVAVEYARKEHARCVEIVKDMNRAVGEALDNQRPE*
Ga0151514_102028	F004305	AGGAG	MEKEVKEMQSEQVRQKTRMAAGAWITGESLKEKSTATMPLANSDHGNFSQPKGVDKSNA*