Scaffold Ga0151514_10171

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10171
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32260
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014143	Metagenome / Metatranscriptome	265	Y
F017968	Metagenome	237	Y
F029105	Metagenome	189	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1017114	F029105	AGGA	MKHNLQHSFQDAVSFDDGETIEVVTVGYDHLPEENNYPHAPDYAEMFDVFVFDANDKDITYDIPNEEYKRLMDEAKRDFYTCEAV*
Ga0151514_1017117	F014143	GAG	MNTRFLTHVRRIFASYDAPPATIRSYQRQWVRSVRQLGDKWLVAKQIERIES*
Ga0151514_1017122	F065786	GAGG	MTKDDLIALLRMTGAQEASIDAVCAAYDAGWNDALDDYAKRIQPLPFGKVTIDSFSVFIKSAKK*
Ga0151514_101719	F017968	N/A	MKQTEFLIESEKANNLATLSSQERLNLRETMRQTEAMEWIRRYRKKVLEEGRGEAQYWWQQTLADIAKKRGQPAADDLRKRMNEQKDKK*