Scaffold Ga0151514_10094

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10094
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37973
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (67.69%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F006138	Metagenome / Metatranscriptome	380	Y
F012113	Metagenome / Metatranscriptome	283	Y
F019290	Metagenome	230	Y
F049401	Metagenome	146	N
F055438	Metagenome	138	N
F060551	Metagenome	132	N
F063298	Metagenome	129	N
F074409	Metagenome	119	N
F079581	Metagenome	115	N
F086801	Metagenome	110	N
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1009419	F005702	GAGG	VIFGLSIFFGLLILQGVRLLAKHIDQQNYERRNFYLWVAAELDKMDKIVAEGNRPKEESIPSNNWAGRN*
Ga0151514_100942	F063298	AGGA	MSDKQLGIELKKTITLLEKSKEKTVEHMGECISLAADAGDIIASARKEDADLDTILSIAGINGEQARRLERVAKARPSLQAPAPGQLKQLALWAGILPDPIENSTPRPERAWHHYIVLAKQWIAKKVVDQWSPEQRNEFVDEARPIAQAFKDAGGQL*
Ga0151514_1009420	F074409	GGA	MNRHGVKAKNSELVLERLKGIEIKARYIDGEIMGMRTRSAKGTIILIDAFDPANPLPISERLKLIEEIEPASYEVKANALLRMPRLDHDKLQACWTEMEYQNQKAGEVLWEGFVSKDDQKYPFITNPAYCSTEWHKMRIRW*
Ga0151514_1009424	F086801	N/A	MTGIKVVASNEFTEKHAYHLSQIQLATIEAIETKYRAGQAEHGASGPLWAMPTISVTENSIAESVDQISYLMTLRGQIKIIYELARLGMEDTDLCATTARDSCKKIFEMMGGKK*
Ga0151514_1009426	F049401	GGAG	LESFSGGLKIVLRLGQNEMMRKLNIGVSCVMLIWIIGGGIVLSSCASTQYTYTAPSPADIPELIMEWDRLERTIGLVRPEFREQYAKALKALSNAIAEQERWRARAENK*
Ga0151514_1009427	F012113	N/A	MEQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGEEPEATLTKIVSLLSKLSRK*
Ga0151514_1009435	F090073	AGG	MNEILDDELNGSFVKPGRDYKGDAIAEYTEGSRLLMLQCKEPQDSSVYFIWAFLYIHILIAKNRKEAIKLAWNKDEFRDQLLGWIEDKTEDDRTLATNIVSEMIEEASRAKVSVVSSGNVIPGND*
Ga0151514_1009436	F019290	N/A	MEGTTYWGTTNLKVAACVAAFGATLRQSDPVTNIVKQDGTRQVTFWFNAGTGSAEAKKQMECKWSEVTADPESPILYVRAALENRETLLGLCKRTEPIQIISKGGQTLLVPVNAKPELKRAILRAM*
Ga0151514_1009437	F006138	GAGG	MAATSIGTAGLVFGLTAETIGLVQSFSETRNVEKNEVRNQQGEITAVGYYNPTTAYSLSVAITGSTSLTVGGSFAALANATTVGTCRIDSLTLNKSNSAFVMLDISATGYPNVS*
Ga0151514_100944	F060551	GAG	MKTDGQDPADSIRASYTPDMAETIDTLEDQMRERLSQMQAMNPALGLDMLAKMLTQIVEETISNQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFMNPSTGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR*
Ga0151514_1009443	F079581	N/A	MNQTPQFNVEDAIRDLLVGIAGLNVYTTNRTGLRFFPFATISASVNEQMLGNYTGVYDMSVAVNYSDTAAKISQEDFDSEYCSIFEAFYSETPTLATKIQNTILDTKIHMARISSQSPSIRANKRAWQRGLTISVICTPSELDDGIRYLDFSEPRNSMYVAVI*
Ga0151514_1009445	F005584	AGGGGG	MAGSIDTTYFLSDLNGMIKDLHSSVTGLGSNAVSASVTDLTTATDLDIGGEVLRITQSLVVPASSISAPTIGMLCSVSGVERMVAGFSQSVDGVSFTIELADITT*
Ga0151514_1009451	F003049	AGG	MKSAKQIIGCRTAKKGENTKGLGIITFGKSRPCKTKFVDFDITYDKKAEKELFECGILALKKDPEAVIQYVVKKALLEMAKCKK*
Ga0151514_100946	F055438	N/A	MNEPFISSAAKAKAIINERYTAGDLESLMATTKRQDKIELLRDAVKTLIVNGIPTRTIAETLNKSQGAIQYHARYLSENGEIKKPKRTSQWRDAIK*