Scaffold Ga0151515_10880

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10880
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12037
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004788	Metagenome / Metatranscriptome	423	Y
F006894	Metagenome / Metatranscriptome	362	Y
F089900	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1088012	F006894	GGAG	MKQAEDNKTIDMWETTGKFTWGYRIINLKSQNGGDDWYCLQEVCYDMNDKPTGYSAPCLGSENMEGMRDVWDMMTDAMVLPPMQEEDFPK*
Ga0151515_108806	F004788	AGG	MNAFEVLIKQADEKVEQLKDYLADGKAESYEEYKKLCGEIRGLLIMRGYTLDLKQRLETSDD*
Ga0151515_108808	F089900	AGGA	MATTGLDLRTLEQLRGGDIDPSRLKERKISSADQPYTSAGLPSLRVFDAPELQGTNGLGFVLGSNRIADFDKNRRQAQAVFLRQDADKDTLAHEQEHLLARQGLGTGAMINKKFDELIGKHPFLVGGAQRKQFVEDAVGVAEHLKTKYGIDDAYFDPHVLKQGGTALYEQLASLAGYEAANNVDLTKDPVLRKTLFKNKDVRETYNAITGLRQTRLDARDLPPYTRQPEPAEPSMMDKLKKMIGYANGGYVENVGNNKLI*