Scaffold Ga0151515_10742

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10742
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13679
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001279	Metagenome	732	Y
F003213	Metagenome	500	Y
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F024785	Metagenome	204	Y
F026267	Metagenome	198	N
F032279	Metagenome	180	Y
F037730	Metagenome	167	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1074210	F003332	N/A	MPGVAVVDSGNYSLEIDTGFLIDAFTLGSATRGVLGNPDYVLGGTTEFAEVLDGVNSLTCRRGRRDMGDQFGAGSLSFTMLDTTGVFNPLNQDSPFFDTANDQPGLAPMRRVRLSRYDAYDMKEYLFIGRVVNYDYNFALGGFDTVTVFCADDFYLLSQTDLAEFNVSEQLSSARLSAVLDRPEISFPVAQRDITTGTQTLGGAAAFTISNGTNALAYCNQINVAEQGRLFMARDGYLTFQPRIGNTLSAPVADFHDDGTNFRYNGVGISFEANQVVNRASVSILNGSPQVAEDLASQAIYFIQTESITNSLLHNNAAALTLAEYLLIPQPSARYTSVQTEFFMLTEAQRDLLATVDIGTTITVEKTFITSGSSTTELAQELAIEGIEHRIDVNRGHSVTYWTSPTTVVYQFVIGDPIYGILGADNVLG*
Ga0151515_1074213	F003213	N/A	LTSKNINKAKRQIGDQTTKGGLLGIMIYALSRNNVDPVLIGLIVPVAASFLAWVSTKIGDPDLACMFIPDEK*
Ga0151515_1074214	F024785	N/A	VKPYTVNAAPVVAKPLQGMDAWLTRAVFHSNKSLWNNGSWVLRDVRGKPGVVSNHAKGLAVDLSYRWQSEKNRGRQDGRKISLAFMNKCLEHADTLGIELVIDYAMKRSWRCDRATWKAFTCEEGDWWHVEVNSVIAHSPELAQQAWNRVFGLIPQVTIKPV*
Ga0151515_1074215	F032279	GAGG	MHLTIKLIIAFSLSAIGLGAYQVPQPRPDMASTTPTEKPYEALGGFGQVMADIYRYVPSTTTTTLPATVYKHGDCSWLPAVALQAGWQPEQLITLTKIVLRESGCCPRRIGGQKVLPDCTPNGFAETTHLSDSGLTMINGVHWKTDHAQYDGLICKQMKICTQEPLLDPLTNLQAARLIYIRVGWSAWDTCHSTKSCK*
Ga0151515_1074216	F013413	GAG	MTENEYDETFNMQMEREHQETLRRMQEFRLIGEQISKMPETPKHVLEIEVRYLMGIISELETRIKDLESEVRRFELLVTRGN*
Ga0151515_1074218	F055728	GAG	MRRSYDPHYGSREQLRDSAEHGMKVARERDALKAENKELLDQITELKALVKYITEGE*
Ga0151515_1074219	F037730	GGA	MIDFDEARHTNDYLISELVIARKENEVLREHIKTLAQDLKDYSKLLDAFVKSLS*
Ga0151515_107427	F026267	AGG	MKVKLKLDLADGKTERELTTNLFVICEWEKTENRRVSDGKGIGYSDLVCWAYNLVKLAGDKVPKTWREWLEQNPDMQVTAVDQTDPNPTGLELTEGN*
Ga0151515_107428	F001279	GAGG	MSVSTTISVVGVKDTINGLRKIDPQLQKDFKAQATLIAQPAVQAGRDVYTALPLSGMKYKWTQRDRKLFPFTVSKAVNGVKMRFDTRRNAVGVILIEQKDPAAAIFETAGRANANRLSNSLGFVGPGRTRLIGPAVYKARRGVEKELKSAVMDAMRTVQREL*