Scaffold Ga0151515_10712

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10712
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13955
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F014971	Metagenome	258	Y
F023058	Metagenome	211	N
F027510	Metagenome	194	N
F027779	Metagenome	193	Y
F047052	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1071210	F023058	N/A	MAGVAVIGSGNYDLEIDTGYNWDAFTLDDDLKGELNNTQYVLDGTDQYASVMDGTIGLTAKRGRANTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANNQPGLAPLRQVRFSRYDSLGVKKYLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEELSSTRFGNLLDLPEVAYTGTRSIETGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTITFQKRLGTTLGVPVAEFHDDNTNIGYSAIDISFQADTVVNRASIQHAGAASPQVAEDLVSQAAYLVQTQSITDSLVHNDAAALTLAEYLISPDPEARFNFLGTEFIGTPAVDQDILALLDVGDLINIQKSITTSAGPTQFAQDLTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILNDLVYGTLDANNVLG*
Ga0151515_1071213	F047052	AGGA	MKIKLTLTRGDKKETLITNLFAIAEWERLENRRVSDGRGIGASDMACWAYIMLGIKGETLPPTWREWLKANPDVEIGVEDATDVNPTDAATGDNSPNL*
Ga0151515_1071215	F010237	AGG	MAVPNYTDLFNEGFDDLVAKLSTVSGLQVNNDPRNISPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVTTVVQTA*
Ga0151515_1071216	F013988	GAG	MAVYSITQKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDTEGDLLYDANIPIANQVLVAKTASNVTRTAAAGTLTITQTCTWVTAANIEDWLGIGTATAADAAFLTVCASASSQFAWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQYASFQNMGVTPVMGLNGMIRQLLGIDRPQVA*
Ga0151515_107124	F011919	AGGA	MNDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSVIAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTLAGNMAIVWKAR*
Ga0151515_107125	F000722	N/A	LDTLEPSEVTEEQYPETGITEETRQMYPETYSDKYNKVFKQFLDDIVRPNHIEPVQHDHEILIDELVIMYDAFITLGGEVNRFNASVLKAAINVIRAL*
Ga0151515_107126	F027779	N/A	MDEWIRQAIRFSDEAFYNFGSWGIRNMSGSDNLSVHACGRAVDLSFAVTEKHPTANRKGMVAFLNIVTVNANALGLECILDYTPKPFGRGWLCTRQRWSRYSKPTIHGAPNGSWCHFEITPAMADSPTLVKQAFQRVFAEIPQ*
Ga0151515_107127	F027510	N/A	MTVNNLPKFVILLVGLLCLTALMIADKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFGNKKSK*
Ga0151515_107128	F014971	AGG	MTYAEAVAMYPHDSVEIQIDNVVRPMTPAEYDAFIQRQVNYVPRD*