Scaffold Ga0151515_10649

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10649
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14682
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003267	Metagenome / Metatranscriptome	496	N
F004837	Metagenome / Metatranscriptome	421	Y
F012449	Metagenome / Metatranscriptome	280	Y
F017993	Metagenome / Metatranscriptome	237	N
F020667	Metagenome	222	Y
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1064910	F004837	N/A	MTQTEYLLAAKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADLFAQANQQTVTHALTNTSSQ*
Ga0151515_1064915	F003267	N/A	MKLIHYYHVYCGGGGQWQLIMNQHMMALCNYGLIERLHEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAWEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELIKVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFIITF*
Ga0151515_1064922	F020667	N/A	MSVTLIAYPLNDSNVEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNEKCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFAEAGYRYSSNFFNSATFGKLVLPYAAGTMPVNLSGSNIFAQSTGNLTPFVESTDQTLLFSKDTPAPFYDRPNYWTASSSIFVAPQTDTRWNVTVNFTVSGSVATTPSAPYIVCALSIRNITDSTDNAYIGGVVVVKNQVASVTFQDVRIPANTTANIGFRVNNDYTVAAQNFTVLSGSTIQWTCLENPTSIGTLDMRTALPADVKQGDLLQDLQKMFNLHIMADAQDPKLLYIEPWVDFYASGVVDWSQKADENAEQILTNGDPNASTNLIFKYKDMSDYLSKTYKQSYPLAREGYGGKLFPTQNFYGKGDKVVETSCGTLIPASFSTDKIVGRAWDIEGTLASGTVKPLQTGYRLAQYNLIEGQTEWAYQYGVSGNVALSVGILRMPFVSHIDNPYAPTFDLAFEIPRLVYYNAVNASGSTINYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLAEFAPVTDVPIYTNPAFLYNGPITSDPSDPNYEPPVNPELPQPGE*
Ga0151515_1064925	F017993	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLADGTVIRVDGDLVAGTPVYVITEDATLPAPDGEHQVEGVGVVKTEGGKITEVVVAEAPAAEVAAQEVEIEVS
Ga0151515_106496	F046337	N/A	MPIPMEEVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVAAWMYPKQPK*
Ga0151515_106499	F012449	N/A	MEVILTLLVSSLTALAIAEYHVLPQAWYRTWLGRHKPFSCVTCLSFWVAALLALPVFGYILAPVCGLASAGLTVVILQLTNR*