Scaffold Ga0151515_10619

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10619
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15033
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026860	Metagenome	196	Y
F042341	Metagenome / Metatranscriptome	158	N
F074557	Metagenome / Metatranscriptome	119	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1061913	F101160	AGGAG	MTTPYHSHHAVNNMNDLIDKHVPVREAALHEHYLKAAETRALLKRLGCWPDKPTRSPETRGKKPKNGKLASEIGRDAYHWAYANKATYMEAAERFKVDADAIHSYRQYRKLPKLRTI*
Ga0151515_1061915	F074557	AGG	MTLILALSAALLVSEAIPEATLKAVEQIESSGRGVATPSGDAGLARGPLQWHSVAWKDCSAIRRKAGLKVYPYADASVPSKARDYARTWLTALSVRLAAEIGREPFPGEVWLAWNLGWTGFKRYGFQWADVPTAKFEKARQVNTLAWGLPKQDEATR*
Ga0151515_1061916	F026860	N/A	MIKSATIIERMIRELNKDKSIAPTPEGYFTVEQIRTELHMAHTRNASSRAYDLFRRGILERKAHKFKAATGQCHKAYVYKPIAPYRSIREASDGLFDYQADKVPEGWARIVDYVFTHDISEAAVRSKVARAGLKPKYWKTPRGIIGLHLNAFYKKSDLDRVMRKR*
Ga0151515_1061923	F042341	N/A	MSSPRPKSDPPAVKYDEPHFTFRILGKVRPTHKPKCPTPFGYCWKGFGDIHVDPRQTEEEMIDTITHELLHDALPFLDEEAVEKAANTIAKAMWKLGYRRTIE*