NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10417

Scaffold Ga0151515_10417


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10417 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)19061
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009839Metagenome / Metatranscriptome312N
F100975Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1041711F009839AGGAGMTFGCFHTVYENKKATEFILQEFRKYYPDAPYTLICDGGVDYSDLAKKYNCKYIHSYMRIGRRNWGDSSGIYGFTKDESLHWIHHFREAARHVKENGGTHMIMMEDDVLTQGEVKIDPSWECAGFDVPGNKIAPSLLKFIEEKYNAKPNVNWYGAGGGSIYNIETFLNNYHEIYDFIDFDFENILENMDYRFGWLDLYMQIAYFVIGKHYSINTNLTEVWKTPNFRDSEFTLVHAYKELY
Ga0151515_1041716F100975GGAGGVKKKIVFWVENKPYQTFSYIYAGMKKAFERLGCETYWFSDSNYPSKLEFDYSDCIFFVDNQGPLDWNVPIIDSGIYFSYDKFTNLDKYLDKVKCLVNYRVAEFKKPIPDGDRYIEVEKGVTFDTQAPEPYNVVYFSWATNLLPDEIDFNWANRQRNNEYNFVGTIHSPRPKSKPLHQDFIDIVKNKNIAFNHYNPNINPATDQEHIRILQESMFVPDFRPQEQKDNWYVSCRVLKAISYGCLTVSDSFYLKHFIDDSLLVSEDAQEIFDLGMKNQYNKDLIVHQMEIIKKDHTYLNRCKGILQIVENIK*
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