Scaffold Ga0151515_10253

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10253
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24965
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001817	Metagenome / Metatranscriptome	630	Y
F017592	Metagenome	239	Y
F032530	Metagenome	179	Y
F044356	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1025326	F032530	AGGAG	MSIPDNERAAMVVLVSNPLVQQAIEARKNKPESVWLAHSFEEAEANANLFTKTQLPITNPERKRNLIRAFDRAAKSRETYHV*
Ga0151515_1025327	F017592	GGAG	MYDDGDYGGIDEFMYWVTLVILFLMTVVFLGAVAGFIWGML*
Ga0151515_102533	F001817	GGAG	MMQTDVKAAHLSAAGSFMLGRTRLKGIVVSPKVSTAATFEIRDGSATGAVLFTMDIASVTTPVNFNITIPGEGILATTGLHLTTSVGTVVGIEVFYG*
Ga0151515_1025331	F044356	AGGAG	VTEYFHPAFPRLYRIGGEYLPGLANLFGAHECHEGKAHDIEDGKCTKCGVHVKEKNT*