Scaffold Ga0151515_10176

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10176
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29954
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (17.31%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F005114	Metagenome / Metatranscriptome	411	Y
F011078	Metagenome / Metatranscriptome	295	N
F021301	Metagenome / Metatranscriptome	219	N
F031025	Metagenome / Metatranscriptome	183	N
F039104	Metagenome / Metatranscriptome	164	Y
F058796	Metagenome / Metatranscriptome	134	N
F059763	Metagenome / Metatranscriptome	133	N
F068841	Metagenome / Metatranscriptome	124	N
F072093	Metagenome	121	N
F104717	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1017614	F021301	N/A	MNWNNITIHQLQEIHSCRDMSDLERQMNILAIALNLSMDDVESMTLDKLTTEFAKLSFLNDLPKAPIQFMFKLRGRYFRLAKTPNEMCGHHFIELQQVFNGDVIESLHKIVALLSVEVDFFGRNKKVVDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLTTEMKDMTEQLIKAQ*
Ga0151515_1017615	F104717	N/A	LEIVDKIVKGDRTKWDFILEMPLIEFLNAMAFYKAKTKERQKRLEDAAGKGFNPYIVACLNEMI*
Ga0151515_1017616	F031025	N/A	VALSITQQPDSYTPGFNDTNFVITESSGGIYTKDNFKFIADVKIASTTIAKLKAPIYFGSTNKGVFNIGRILESYVSNDWNFADTSPSGCTASFSDYTVQFGYEYSASATGTITEYLNLTSATGTIWNAALNPIDLVSYAQAQYLATSSSAKFLTNARTRSIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPMGSQLTIPGAATFFDVVLKLGGTVKSETYRINIKDECTKYDTTDIFFMNRLGGFDSFRFNMVRRDTFEVERKQFQSNPYTLGATYGYATSVRTRSNYHTKASQKVKLNSNWIDDTESVWLRDLIESPVVYMYDGTLYAVNIDNAVYEQKKGVQDKMFNLELDITLSFADKSQRL*
Ga0151515_1017620	F058796	N/A	MNAKETLKEIRTMLGFSDEPVAVELATATLTDGTIIEWEGELMVGTAVFVQTAEGNIPAPDATHEVEGGTLVTTVAGIVTEIVEPEVEVEVAAEEFATMTAFNEVVAKMETAIADLTAKVATLTASNNTHKEAMSKAIDLIEKVADLPAEEPTKIPVSNKKNDKFEALAKFKNSLNK*
Ga0151515_1017624	F072093	N/A	VNKQHNILPSSPVDVFFGLATQDDEILLTQDYNVLGFDGIAYIDNKQYNPTLIQKQSNRSLTSKVYKPSLTSKKIDYTLNLKTYGFQESKKQRNVTQSAKSYVPSLMAKQNNITQSAKSYTPNLSETIIQDNFSFLVTQDLNFLTTQNGDYIGFDSAFIGYLLTTNNEFMRTQDGNFLEL
Ga0151515_1017627	F005114	N/A	MKAIQINTPVNLTSGLSIPSGSVCVIAEGYADVKSQKDGVIPAQIATFVFASVEALAQGKAPIQGIQDFNTTFSGLELSVSDYETKSAEVLLVNAVFNALDLIYPTQVEIISL*
Ga0151515_101763	F011078	N/A	LTKADIILELSKADWLRKATKNIAKNNELANELYQYFFLTILEKPDEYVEKLHREGYIQFWAIRTLYLCINGNRHPFGESRIYDQYDVYELDFPDAPDLLFEREQEEQIEQQRINKINQVTESAYFYERELFKLWCSGMSARAIHRQTDISVREVLRVIKLMKERCTTK*
Ga0151515_101764	F059763	N/A	MYNEIIGIACLSIIIVNFGKPADLLKRYLYGSDYSKWKRMKPLDCAFCLSWWLGLSFFLYTYGLVGILYASIATVIVALLETKL*
Ga0151515_1017641	F002909	N/A	MAEIDLSKLPDALDTYLGDASEGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFVPGNITKSPTSINTILLAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPAEGQTYDTLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI*
Ga0151515_1017643	F068841	GGAGG	MIELAINGWILSVPGTLKVEKYIYTIEAVDHWLIKNHIDELQEYVNSRQVGFGDCVTTEFDGINSEAFFCWEPTRFSVLFMIGQQTNFL*
Ga0151515_1017649	F039104	N/A	VVKATINFIVKWRVYFAGELLATFETEQDAKDYANLIDQQDNN*