Scaffold Ga0151515_10068

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151515_10068

Scaffold Ga0151515_10068

Overview

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10068 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	40601
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (75.93%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F070105	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1006831	F000324	GGA	MVRAVTPAHMLTYDGAQLNVYHVDKGEGLPKHGHTFSHATLCHAGSVMVRKEGKEMVMDKTTQPVNLVANEWHELEALEDGTVFVNVFAVQEPPVDFVGKLG*
Ga0151515_1006832	F070105	AGAAG	MTIKDKAKKVVGKVDEVIVKTDSTVDHALDLIKNSKRSIIIIILIVGLIIWMV*

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