Scaffold Ga0151515_10055

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10055
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 44487
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (88.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F012214	Metagenome	282	Y
F015330	Metagenome / Metatranscriptome	255	Y
F027490	Metagenome / Metatranscriptome	194	Y
F071969	Metagenome / Metatranscriptome	121	Y
F090372	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1005510	F012214	GAGG	MSDYSRLRTPFLNMSFTPDVPSNALGPNEYNSGLNVEADVRGIKKINGEQSILDQIPGHTIFIEGNFRTQATWVYIAATREGKWYLITANGITNITPGFGANPNVALSGYSDDINITASWVGGVFFINDTLRPPMYYRPTDTEIQIYDAAPDSFVWNYGTSVIATRAGFVRNFCSPNVGNILIAGNLTQDLDTSVTVNYPTTVRWSQAFANTGVPATWEPTLSNIANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPIAYQSSTAPIFGVRLFNQGRGLLNNNCWANTDQYVYGVDSRDIWVFDGSTFSSLGNQKVRNYFFANLSPTYQDRLFVVNNTQKYQIEIYYPDLNSTGWCNKMLSWRYDLNVWNAPKDVQGACNACEAPVYNSDEADFMYASRCVTYGVGGVSSAQMVQTNQGNSFDGAPIPALFERNNVVLQTEKGPVPYSSKVYIHRALPEIAGTGTVDITLGGANSTAQDPTYGQTGHVAIVTDNPWVTTQQNSVRTVSIKVESNDATDAWNLTAMNWQASVVEDAF*
Ga0151515_1005516	F000857	AGGAG	MELDNDSTPRISEDYFTKGNLEAGIDGVFRQNDKLFKEVKSGTWSQTFKTKNLDYKVGAINGHRYVQYDQKNVEEVKQFCKERREFHKIYGTDNPLFAGTFHAMQLPKCFAHEIASKWFNNRPWDLIKQEKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0151515_1005520	F004695	AGGA	MLDKQNVIVEGIESPSGNKDLINKVAHEIYVKMVDYLRLTQSKNTYNRFSDYHYLNIPISNSTEPIRGIDYIHPVVAPGIDYATAIITKCLMPNGKVNFEFERFTEMDSDQSNQATEMTKYMINSKNDSYQVIRDWAQDACLHKNGIVMVSPNRRPITQYKQVEGTKDQLRSFEIMAGEKGLTTKRQNMRKIDVDLQGAMQETMAQGPEATDINETLNANVIYRAEYKLTGYETEVKIKHVAQHYFVCNPTISTIQDQDFCGFYDPMTIHEAKEQFPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWLRRDIDGDGQEELIECCFSGSYVIYAKEVEFIPLANMCPKPIVGNFFGYSLAERLVPMQEYATAIARAEMAFAMQSSTPRIGVNPEFVDAEEIQRGVSAMFILDRKFDPQKHVYEFEAMQGNLAYVQSAMQRFDADKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDMIYLVWKTLIQYEDDYNIQQLAGVVSGGKPFMDALSMKNFEFIDRKLINIDLALGFLSEENRLTRQQLIVQCQTAFAQAMMQLDPSVPELFAKVRRPYEDTLRVLNVKDVDAYLPTIEEAGKIAQARSQQGPSMDDQEKQTKMDLNKASTQEKVAQAELLYKKIEDIDIDNEFVKKAAASGKLSAVEID*
Ga0151515_1005523	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDRTQIALDLIGKTKEDQYQVAKNALEGKKIPQEYITDLNPYVDKRETIPVDEKRKLPPRSEDLPPIESRTNFFGAFNMPHPKDPQGDKKVQINFWKYENGLITYQIAGPTEQIAVGKRINKYGQSVPEKYSWIDPRTEERVLRRPDGTFTQEGRGLYLYCSGEKGSGIWRMIDKDISATSSKNITDPWA*
Ga0151515_1005524	F027490	GAGG	MSNYGQVLSGGASMRKGLSKDINDKRKSHEGENDRRQVVATAVNNAYKVNTVSSQHTNNVRNSGKFTKPSVPKNV*
Ga0151515_1005526	F015330	AGGA	MATVTKLKRPVGRPSDVNKVTEYGALFNRLNEERLDAGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPIISIEHVQNVQRDDEEDADGALENFIQSLKKV*
Ga0151515_1005547	F090372	AGGAG	MIDRLILSAVLGTVGWHGLNPEPPVPMTLQAKAKYKSVSAVCAKKRKTPTVKKLCNEWEQHNEQKRI*
Ga0151515_100556	F071969	AGGAG	MKEALISTIEPRETGYRVAQVVLTGETFPVSVEMFWTPCADDVVQDQFWYDPSDQTIKPIPVPPGA*