Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1799 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10333 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (19.05%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000847 | Metagenome / Metatranscriptome | 861 | N |
F001129 | Metagenome / Metatranscriptome | 768 | Y |
F003459 | Metagenome | 485 | N |
F007748 | Metagenome / Metatranscriptome | 345 | N |
F009057 | Metagenome / Metatranscriptome | 323 | Y |
F011581 | Metagenome / Metatranscriptome | 289 | N |
Protein ID | Family | RBS | Sequence |
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Ga0151517_179913 | F011581 | N/A | MTYHSTRPAKALTNALERLMIAISPADLEQNHALLCEYRRACELLGYDPAKAQWAGINEVSASQLPKDEDHTVCYYPLLNPEE* |
Ga0151517_179918 | F003459 | N/A | MNHLVTIPKSDISKADIADIAANLILRIEEGEVNPIAAHVRLKAVVKALEQVLKSTEDIVRDEAEKHGKTFSAFGAEIQIKEGALTPDYQHDQVWSDLQVSMKAREELLKMAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFKAS* |
Ga0151517_17993 | F000847 | AGG | MSWIRIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLSLVVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSVCEIPT* |
Ga0151517_17994 | F001129 | N/A | MLGQGGSMEFVDAAVTGKNYDFIVVNAAATFTTLTGSGGENLLTAYAMSAKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL* |
Ga0151517_17997 | F009057 | N/A | MATFRKFAFPDKDTADKALKALQPLDFAVQVGELDGLVCVDILFQDTCPEDLAAFVVWPDPVGVHTFLGWDEQYTKDYQEFATPNTK* |
Ga0151517_17999 | F007748 | GAG | VNLIETTIVGTISAIVGGGVAWITKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIESLENTIQQLEAENANLKSLQ* |
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