Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1686 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 11252 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001190 | Metagenome / Metatranscriptome | 753 | Y |
F001806 | Metagenome / Metatranscriptome | 631 | Y |
F002721 | Metagenome / Metatranscriptome | 534 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151517_16861 | F001190 | N/A | MTYTAPAGQDAGDTYFDINKFQELLNRLEASKGRQQRQKSVEGRRDIYAQGLASMMSNF* |
Ga0151517_168610 | F002721 | AGAAG | MAKDGRLDLGRYIQNPFNRRGEIARRLNFDDLFASKPESGQYPWNPSRFGAQDLMKRAMTRKINLNPELNFVGNTPFFDDNSEVTPQYDMFGLGTFDRPEAYDFDEGRAKTAQRPQDQPDFDPTWMEAYKLSPTINPGKRAKNPMPRTKNPDPNGYLMAMAENRAEDEVSGKPSIAQLLDNKGLMKAVEVKKDDEEGEKTADDESVETNVSPGKTTA* |
Ga0151517_168613 | F001806 | GAG | MDAGMRQKRVEALEAIKNKALSMAEKGRDSLEVRDFVTSARKELAYELPNEEAFNKAVNATMAYKKKQEG* |
Ga0151517_16862 | F001190 | N/A | MTYTAPAGQDAGDTYFDINKFEELLNRLEASKGRQQRQKSVEGRRDIYAQGLASMMSNF* |
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