Scaffold Ga0151517_1686

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1686
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11252
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_16861	F001190	N/A	MTYTAPAGQDAGDTYFDINKFQELLNRLEASKGRQQRQKSVEGRRDIYAQGLASMMSNF*
Ga0151517_168610	F002721	AGAAG	MAKDGRLDLGRYIQNPFNRRGEIARRLNFDDLFASKPESGQYPWNPSRFGAQDLMKRAMTRKINLNPELNFVGNTPFFDDNSEVTPQYDMFGLGTFDRPEAYDFDEGRAKTAQRPQDQPDFDPTWMEAYKLSPTINPGKRAKNPMPRTKNPDPNGYLMAMAENRAEDEVSGKPSIAQLLDNKGLMKAVEVKKDDEEGEKTADDESVETNVSPGKTTA*
Ga0151517_168613	F001806	GAG	MDAGMRQKRVEALEAIKNKALSMAEKGRDSLEVRDFVTSARKELAYELPNEEAFNKAVNATMAYKKKQEG*
Ga0151517_16862	F001190	N/A	MTYTAPAGQDAGDTYFDINKFEELLNRLEASKGRQQRQKSVEGRRDIYAQGLASMMSNF*