Scaffold Ga0151517_1662

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1662
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11554
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F012013	Metagenome / Metatranscriptome	284	Y
F034902	Metagenome / Metatranscriptome	173	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_166215	F034902	AGG	LYFPLISAKLSKYQKERKALMISTALAIQEATSDAVHDEEVMGMAAAIFHHRHELSEDDFIKAMFMYSAHLSAMTATLVTHACLTESQINDMLETIKEMDSMGKDIENGNN*
Ga0151517_166221	F058095	GAGG	MEYNYVLTTAYDGELFSTLRLNDFAEASEAWAKCSDHGNAKEYATYNLTDPTGKMFTKNFYSDGRVSVK*
Ga0151517_166223	F005092	AGGA	MDKLEYALNTIRNCDFCYGKGYHGFANGEDYDMEDCECNPYGLILDDDGDVIWDNGLLSQNELSIYATSEAN*
Ga0151517_16625	F012013	AGGAGG	MSELDLQEATRRDDVYRDLNDILDRVTKLPVFPSLMWVWCFDIIKEIFDNYQYKDLAVNDYVDEAVPEGITLKQIFDKFWSDVDGFGLSMDSGGDIIEETIRDWMRENDFLIALEDSQWLDEAVEPNV*