Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1550 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 13133 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (76.32%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
Associated Families | 11 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000808 | Metagenome / Metatranscriptome | 882 | Y |
F003393 | Metagenome / Metatranscriptome | 489 | Y |
F004132 | Metagenome / Metatranscriptome | 451 | Y |
F005348 | Metagenome / Metatranscriptome | 403 | Y |
F006844 | Metagenome / Metatranscriptome | 363 | Y |
F007112 | Metagenome | 357 | Y |
F012455 | Metagenome / Metatranscriptome | 280 | Y |
F014849 | Metagenome / Metatranscriptome | 259 | Y |
F034573 | Metagenome | 174 | Y |
F084217 | Metagenome / Metatranscriptome | 112 | N |
F084233 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151517_15501 | F012455 | GGA | MLNEIKNKIIRIQELRRSNAATPIPNKKKYSRKVKHKNAK* |
Ga0151517_155010 | F000808 | GGAG | VEYNYALTTSYDGKLIHTLRVSDMLTAVDAWNKCVDYGTAKEYATYNLSDLTGKMYTKTFYTNGEVVIK* |
Ga0151517_155013 | F003393 | GAG | MKTLEKDDIIPIMDYHKVDMLTAGQLMVDDNILVDNEVVSITEIVSLADGYILEIINDFGERDTLEVTEYQQFDLMMLK* |
Ga0151517_155019 | F004132 | AGGA | MSEVMTQEQLSVPYNPNLLVTYKAIPNTYSAPESPTFMTDKVTDIEWQLHHGRLNADTLKERNADLRWLEDQIVEWYDPNYSKEDVLQALAQKFELNPTKEIEVQGTVSFSGTINVPLSEIADFDVSNVTIDVELSSYEYDADLNVDDIQVEDHY* |
Ga0151517_155022 | F084233 | N/A | MTLNVEIYEMDYSCSPGGVNCWEVSIDEWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEFANEYAV* |
Ga0151517_155028 | F007112 | AGGA | MHTLHYIAVEANSKQEAFDKVVVSLQPNEDGYRIGDWSDWHVVGGGRWSTNAQKSKNFMDGYNHDSTDVIGYAENKEKFQEVVKNILKFRSQSMNRNIVEIKTDKFISQLVDYASEGGRGPWNGDNLMNVYSIKQAAEMLMGSWTCDSGFYDLQEHISEFEYLDERLDKPELAMRQYLVPVDFHF* |
Ga0151517_155030 | F006844 | GGA | MATWDVEIIFEPTGTYMNFEYETDTEDEDDIFNEITNQISIIPERTDA* |
Ga0151517_155032 | F034573 | AGGAG | MYRISRAKRTTNEEKVATAIGKLLSDFYLDLEKVGYYLARATPYLIYRRALEVLESAKFQEDKIEHDRLQYDQNKLP* |
Ga0151517_15504 | F084217 | AGG | MSDYLNYLDEVYTDLVAEYGENITLAYHEANIKEM* |
Ga0151517_15506 | F005348 | AGGA | MINSVMTFPCDTCDNKGYIFWGNDLDYDVEPCSCKDFTLGTLFTTKEAD* |
Ga0151517_15508 | F014849 | AGGA | MLTNLDLLAIIIALSSSMFVMFLFYKQNVAQQKEIRYLRNLKKLK* |
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