NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1364

Scaffold Ga0151517_1364


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1364 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)17335
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F003459Metagenome485N
F005845Metagenome / Metatranscriptome388Y
F007748Metagenome / Metatranscriptome345N
F011581Metagenome / Metatranscriptome289N
F030688Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0151517_13641F030688N/AMAISVLSGSPQAATPVYNKMLFKVSGSLTSGTNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNIVFAGNLEQLELADWSGGVYFPSGTIANNITRILTTPTTRTVYSDNYGWLAIGQFGGAVGKAYIQYWQAGASGFSRQFEVTPTGLSGSNIVRFGVGP
Ga0151517_136417F005845N/AMKPTPTDFRRWQIHIRKECVNCSRPDRSETISPWRVNWVLLGHVLNAKKA*
Ga0151517_136425F003459N/AMNQELVTIPKSDISKQDIADIAANLIHRIEEGEVNPVAAHVRLKAVIKALEQVLKATEQTVWDEAEKNGKTFSAFGAEIQLKEGAITPDYSHDQVWSDLQASMKAREEQLKMAFRNAGKMTVIDESTGEVVPVCPAKGTKPSIAVTFKTT*
Ga0151517_136430F011581AGGMTYHSTRPAKALTNALERLMISISTQELEENHVLLCEYRRACDLLGYDPAKARWTNVEAVNASGLPNDEPHTVDYYPLLNPEE*
Ga0151517_136433F007748N/AINRMDAGQQVQQAYRSSQGVNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQQTAEAQQKELAQLRNEIVSLRERIECLENTIQVLEAENATLRQS*
Ga0151517_13644F000557N/AMKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPATSLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAGWFGWFPKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ*

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