Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1364 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 17335 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (12.12%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000557 | Metagenome / Metatranscriptome | 1026 | N |
F003459 | Metagenome | 485 | N |
F005845 | Metagenome / Metatranscriptome | 388 | Y |
F007748 | Metagenome / Metatranscriptome | 345 | N |
F011581 | Metagenome / Metatranscriptome | 289 | N |
F030688 | Metagenome / Metatranscriptome | 184 | N |
Protein ID | Family | RBS | Sequence |
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Ga0151517_13641 | F030688 | N/A | MAISVLSGSPQAATPVYNKMLFKVSGSLTSGTNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNIVFAGNLEQLELADWSGGVYFPSGTIANNITRILTTPTTRTVYSDNYGWLAIGQFGGAVGKAYIQYWQAGASGFSRQFEVTPTGLSGSNIVRFGVGP |
Ga0151517_136417 | F005845 | N/A | MKPTPTDFRRWQIHIRKECVNCSRPDRSETISPWRVNWVLLGHVLNAKKA* |
Ga0151517_136425 | F003459 | N/A | MNQELVTIPKSDISKQDIADIAANLIHRIEEGEVNPVAAHVRLKAVIKALEQVLKATEQTVWDEAEKNGKTFSAFGAEIQLKEGAITPDYSHDQVWSDLQASMKAREEQLKMAFRNAGKMTVIDESTGEVVPVCPAKGTKPSIAVTFKTT* |
Ga0151517_136430 | F011581 | AGG | MTYHSTRPAKALTNALERLMISISTQELEENHVLLCEYRRACDLLGYDPAKARWTNVEAVNASGLPNDEPHTVDYYPLLNPEE* |
Ga0151517_136433 | F007748 | N/A | INRMDAGQQVQQAYRSSQGVNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQQTAEAQQKELAQLRNEIVSLRERIECLENTIQVLEAENATLRQS* |
Ga0151517_13644 | F000557 | N/A | MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPATSLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAGWFGWFPKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ* |
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