Basic Information | |
---|---|
Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1327 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 18571 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001396 | Metagenome / Metatranscriptome | 705 | Y |
F003768 | Metagenome | 469 | Y |
F004761 | Metagenome / Metatranscriptome | 424 | Y |
F012663 | Metagenome / Metatranscriptome | 278 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0151517_132715 | F001396 | GGAG | MEAILVPIAVAIISGPIVVILQKLRKENSEQHAEGRVLLRNVSHKVDKIGTKLDEHIGWHKGKEE* |
Ga0151517_132716 | F012663 | AGG | MQHFYCELCKKQFEAEELPRRGEVCFGCHVKSIRLGFTYGKEDFHGPTIRERQQKTVDDAKMNGYNAEPVGSRWV* |
Ga0151517_132721 | F003768 | GGTGG | MAHFAEIKNGIVQQVIVIGNGDAPTEAAGKAFIASIGLAGEWVQTSYNNNPIEGQDRGKYAGIGDVWNGSQFVSPVSEVVE* |
Ga0151517_13278 | F004761 | N/A | MNLADVRTMVRDISDLDTVDLPNSLLDTFVKEAFQRIVALERRWPFYQETYTMNTVINQRPYSISTIGDIREIISIVETTDSGNRFTEIAYDDAEDIWLGNTDVAGRPYFWAVWDGQIHLYPKPDVVYPLTVRAYRNPSYAWLANTATEIDIDNWFHILLAYYALARVYQRQEDNEMAMMYQRSFEEGVAMARRDLMKARSHRPLLLSGGRKYPTMRRWLQTLGATLGS* |
⦗Top⦘ |