Scaffold Ga0151517_1194

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1194
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25204
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Associated Families: 19

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F023059	Metagenome	211	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_119410	F023585	AGGA	MSVKRLKLVDEFHGIVSKRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKRDLEKAKK*
Ga0151517_119412	F033350	GGAGG	MSVDVDVPRLKWSMLEWKTIEEKPKNDERVLMDCGGEVVVGRFVDGSFVSRSWGHSENDVWLWASWPKAPKW*
Ga0151517_119413	F023833	AGGA	MKSHSDQVQDIINDAMRKAASLERERCAELVQRLSDGTEDQVIQDILNEVVVALRRLTDER*
Ga0151517_119415	F027777	AGGA	MSEALPTFWYEEPANKKLPNETTDEWVVRLFGAFPDTEFDQRNDFRSLNLPVSGSREDRESLGDYDYNQQPITIRKIK*
Ga0151517_119417	F005702	GAGG	VIIFLVSFFGLLILQGIRLIGKHIDQQNYERRRFYLSVAADLDRLDKIVAEGNQPKEPELILPSKNWVGRN*
Ga0151517_119418	F005846	N/A	MTSLPLPARPVGSAVPANHEEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHQLMADMILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWDEMNFQNNKAGEVVWEGFVMKAMDDGKYPFITNPKYCSPAWQKQRIRW*
Ga0151517_11942	F007164	N/A	MSEKQVGMELQKTVRQLEKAKENAIEQMGQAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTPVQRTQFLEEARPIVEAYKEAGGEL*
Ga0151517_119425	F023059	AGGA	MWEAILASLAGLIGIVAWWTKNRAKTRKERDDEQIAYNRRLRDSEVDAWIHRR*
Ga0151517_119426	F012113	N/A	MSQILTFIQSQDVFAWLGALVALLSAVIAVASLIPGDEPEATLRKVVDFLSKFSRK*
Ga0151517_119429	F035669	AGGA	MRENTLNELQGVSILTKEFYNKLIRRIECTKPLAGSGIAISEKENGIEVSISGVGGGIAGYSAITLNVCSNGTPSTIIVFGKA*
Ga0151517_119430	F041645	N/A	MASVIIGSSIDSKVLQRQNFNKEPNGLETIIEAYAIKTSNRDTVVPEKNTLHSAFSSSTKKYSRMAVESVATEEQDGGITQMLVTFVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLAQNNGLQQATLFTPTIKMPAVINGTTMPKDPRQAFFSAPNSGFGGGVIAQYGGYCVLSMSCERRGLFLVARNTYHEVQQIATVR*
Ga0151517_119432	F025225	AGG	MITVELLNQAKFMHKLQQYQQVSKKNMADVINQKLGDVAVTAIGTTYRTNTAQIASELQRVESQVVTKKVFKPFGLTKSGKVKKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLATLGKTKQGIGGLGMGNTPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRASLTRGDYSQKAIQRLGGGTKADSKKSQMEGIIFNRAGDIDTRYYPVRKRAISGAVKVGVPGLKMAIDKVMKDMNVYLARKNKEASDKLKL*
Ga0151517_119433	F019102	N/A	MSISLEEELNSAFISPQKEFMGEKLAPYTEGSRLLLLQVRDDEDSSIYFIWSFIYVHILLAKNKKDAIKLCWNKDLFREKIMEYIEGKTEADREIATTIVSNILDEAQKGKVDVIPTPHQPDLGNA*
Ga0151517_119434	F026543	N/A	MTEAFWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL*
Ga0151517_119436	F012433	GAG	MSADQIGELRERLARIEERQTNIIAILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALVSGAIFSTIWELIKVRVLPR*
Ga0151517_119440	F009142	N/A	MNNSVQINVEDALENLLSQIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEDFDAEYCSIFEAFYSETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLDFHEKRNSMYVGVI*
Ga0151517_119442	F005584	AGGTGG	MAGSIPTSYFATDLSYMIEDLYQAVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEIAT*
Ga0151517_119443	F008741	GAG	MSVKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFAQYHGVFELTSYVKAGHRQGDIIDLEIWPNRYNDFIKSRKNWHDFVYSHPEIKEADKTNIVLDKLDDKPAEGLPETYNLVAPFGISQTFYRNPLTLIQDAVKELGKDSVFVLCPPDIKIQGLNTYTAQSVEQMVKAIRGADQFLAVNSSPIIIASAVRRDKESRFWGEKNEAEVQNVFHFQGLVRVD*
Ga0151517_11946	F024265	AGTAG	MNESYVTPEAKANGILTDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*