Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1177 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 27060 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002739 | Metagenome / Metatranscriptome | 533 | Y |
F021755 | Metagenome / Metatranscriptome | 217 | Y |
F028487 | Metagenome | 191 | Y |
F034547 | Metagenome / Metatranscriptome | 174 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0151517_117724 | F021755 | N/A | MKRQILKLHDKKYADLLDERVKECIQKNENYEVEYKGKVMILTPEDLKTKCLSRQYIEKPKYGEKPYHLLSYLWEPTKTTKDEKGTN* |
Ga0151517_117728 | F028487 | N/A | MYNSEILSHLIAKYGIDDVIKFCDMEREKNALLAESVDEDKQHHPEPNEWRFERDWWAESGKQLKQRI* |
Ga0151517_117741 | F034547 | N/A | MKSAKVNSKQAKSVKGMTAGKAKGSGKPRPAPKVAPPNPINSNYMKEADTKLRLRSKNWPMKQKRLSK* |
Ga0151517_117744 | F002739 | N/A | KHLVYKKTSPTGIGKGKKGNIMVTHPTKDKGKWDTIDLTKIGRAKTVKQGVASTKKWHKDNPDYKYKGKKK* |
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