Scaffold Ga0151517_1177

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1177
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27060
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002739	Metagenome / Metatranscriptome	533	Y
F021755	Metagenome / Metatranscriptome	217	Y
F028487	Metagenome	191	Y
F034547	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_117724	F021755	N/A	MKRQILKLHDKKYADLLDERVKECIQKNENYEVEYKGKVMILTPEDLKTKCLSRQYIEKPKYGEKPYHLLSYLWEPTKTTKDEKGTN*
Ga0151517_117728	F028487	N/A	MYNSEILSHLIAKYGIDDVIKFCDMEREKNALLAESVDEDKQHHPEPNEWRFERDWWAESGKQLKQRI*
Ga0151517_117741	F034547	N/A	MKSAKVNSKQAKSVKGMTAGKAKGSGKPRPAPKVAPPNPINSNYMKEADTKLRLRSKNWPMKQKRLSK*
Ga0151517_117744	F002739	N/A	KHLVYKKTSPTGIGKGKKGNIMVTHPTKDKGKWDTIDLTKIGRAKTVKQGVASTKKWHKDNPDYKYKGKKK*