Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1167 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1167 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	28294
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

28294

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F025268	Metagenome / Metatranscriptome	202	N
F097170	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_116720	F097170	GGA	MATEGSVFDGFQSVVAQDADTHPSFLPEYYVAESVNRTFRGGVNRTRPSIRWLDIKAGEGQPETIVSDIQNGNFQGSYPYRRTKYEANDGLLLAVSGVIYFLRITGSTAYAYKIIDGNDPSLMHTWFVQAEDRVYIQNGYQNAIAWGGDLSIPAYRLNPYEDEMPIGTIMEYAFGRVFVSDKFNNIYASDIIYGNGFTDTKNTENFTEIQYWAEGGAFTTPANMGNITAMKVMPYIGGNLRGQGELVVLTANGAFSMDVSLPRSEWANRQIQRISLLGRGCTSPYTTLANSELWFRSHDGWAFYSNSQSEFGRYFSMRKLSREVNKWVSRDTNWLKQFASAMFFNNYLISTVAPEAKRTSASGLNRYHRGMVVLDLDQSASPAPDAQLSFRWNGLWTGMRPTQLVSAVIAGQQRGFAFSFDQDEKNRLYEITNEHGDDYGPNGTSKTVSFFTTGRYDFSRSEATNRFIRKRITGGEMWLSEIGGEVTTQVEYRADSNPCWSELKVPTTYGCNPCSPVIKSECSPARGGKRYKRYKFNSPDPELCNDIAGIPAVEGSEFQIKVSLTGQATIDRVRLMANIKNNEDSPVGDCPEEEQECPEIICCPERYWDYSITKK*
Ga0151517_11674	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSTYFTRFDEESWPLNHTTEQKAFRFGRGFYDPCTPFRKINDTYCNTDSCDSKPEVIERPGTESYTFELLRREMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRANYIGGSGHKWLGITNDDGITCGLLDDASWFVEQYSGENAGYDLCHVKVKVPVADLVNIAYLSLDMLDDALIELQNEDDAFRMDLQEATGMPLLDIVIPDPRVGRSLYFQAKKNNGYWDANTDFDERLARLKLGINRIIGDYAFGYDINSTRFNADSAYNASLPAFDASNPDTWPRLVRVPRHKKVSAEQGCVYIPNRDYQNADFAISAAMINKAMCKWTMPSSTGYGQAQQMTQNYAGDWDWKNPDWECNRWRKSGFYQAQFRLAAQIKDPTIMHTFLHRMPKARTLIGSCCPLNDYTPSASTVDCYSCAGVGDIVIPG*
Ga0151517_11678	F017989	N/A	MSLSKNCFTDLGPDQQQYEIYSALNGIAGLSIPPYDEIDLTYYGATNNIATVVYSNNGSPVATLTLTYAVQPPTTDDARLVNVTQS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1167

Overview

Ecosystem & Geography

Associated Families

Sequences