Scaffold Ga0151517_1141

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1141
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31228
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (67.35%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F011649	Metagenome	288	Y
F012569	Metagenome / Metatranscriptome	279	N
F033721	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_114110	F001459	N/A	MRKLRAALAFIRDQEWVDEPKWEDEDEKAWTGFLSTPTGRRLSLILLNLTLRQNGTAVMKKSEALADACGYAKGFRGCVAILESLATQKLNSAVLGYEDGSDDTIAN*
Ga0151517_114114	F004760	AGAAG	MPVYQYEDTRNGNVVELEKAVAERDSVPSYLKRFTVPQRLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSKFTPDSIKRATLRRKKYGE*
Ga0151517_114115	F010603	AGGAG	MANEFARSARKAKGKAIRFDTQGQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT*
Ga0151517_114117	F012569	AGGAG	MSRALDKFQGQYGFSVGTQGTATAGYWAIQMLTDTTFSAISGRYDGTLTGITIGSGNVIYGEFDSYTAGTGTVIGYKAG*
Ga0151517_114120	F010449	AGG	MSEDQVWELEIRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN*
Ga0151517_114124	F000635	GAG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSNGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0151517_114126	F002149	N/A	MTAIEYIEKSGVPEGMWQNLAAWFGWFEKQDMVGIVRDGDEIVGVALARCIKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLLERFGPRKRITFNRSGKPKEYDYMKFMRKALR*
Ga0151517_114138	F002009	AGGAG	MNAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL*
Ga0151517_114139	F033721	GAGG	MRWIKKEFDDDGKPEWAVYIDEAGEGREEDWSHFDTYASRDEAVKACWNYTWEDYDCNDK
Ga0151517_11414	F011649	N/A	MDEISATPSAPKKAKNGREIFTEKIADEIISACGSGFTIEKAGALVGVNASTIRTWAQRRPKFAQAVETARKKHELSLLRDIELAGQKSWQAKAWMSERVYGYAQPSARQHVTQEVTHGISGNLAQLLAGIAMKKKAQVIDSEVVKEKPALTNQYNSYCTTDGTQIPITTTPGKISKPRKMSMRRRKPRAESLAKYTTTPPATPPAPI*
Ga0151517_114140	F003304	N/A	MKRALVTQAFGDDWKKVLDLTRPRMEAYCKRHKIDFIAFEKPLVEPVQYSKSAIGNIMATKGYEQITFVDSDILIANDCDDMGDGIEMFCAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFIISSKAVGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPLDNLDPSYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMAKLIEQIKSDDAKLVELGR*
Ga0151517_114146	F004010	AGGAG	MPLGKDVSKNMHELAMDNRKKGSERGAGGKARSRKQMIAIALSAAGKSKPRKFRMRSGM*
Ga0151517_114147	F002826	AGGA	MEVEAKNRLKWACDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEIAGSE*