Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1139 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 31394 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (78.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019815 | Metagenome | 227 | N |
F025724 | Metagenome / Metatranscriptome | 200 | N |
F056546 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0151517_113915 | F019815 | GGA | MAFISQTTRKAPLDQEVSISQPVLGATISQIANGLNHLAFAKGRRSAIAYTSRDNPNSWNYNQSHILADITELRHIPKGNQTYIHLHQSSKNCEHIGFILRYATSDQPISITISLIRNPTTTQDIIDNGCVLSDGNGELVVLPGFKSAVVSSSIDTTGSSTVQTDFSRPLFLPSTYRGELLALKIACVDCKLDMIGSYELYKEQV* |
Ga0151517_113940 | F056546 | GAG | MKIKDRKSILNLYVSTKLISLLDAFSDRRSIKVSKLAEKLMLDGLNRSDLDQVLSIDDDDAIEKITTKIIKELDHGKE* |
Ga0151517_113941 | F025724 | AGGAG | MAKSKAPTTANKSAVKSDTVDSKAGKNSNALTKKPEEDKAEIAKRKRLISTEQVLDFISQGLSQTDALSLVGIAYSTWNGWMKNDPDLVADIKRAEISLKIKHLQNIQRHSENDVRASQWLLARKFPLEFGEKQTIDMNTKGDDSKVIINVIQQVQKEKHGKAIEIKHDLPEIEDQSDEED* |
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