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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011113 Open in IMG/M |
| Scaffold ID | Ga0151517_1116 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34249 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (64.15%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013503 | Metagenome | 270 | Y |
| F019101 | Metagenome | 231 | N |
| F034844 | Metagenome | 173 | Y |
| F078402 | Metagenome | 116 | N |
| F100705 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151517_111612 | F034844 | AGGA | MIKNYADEHTDLERMTCICDHTEVDCFFDPYSQSLHFAYIGGQLVTEMLRDSVIKDLERQYEKACLIELEENKLTVALDRYYAKQDYA* |
| Ga0151517_111616 | F013503 | GGA | MSFAKPTPKQESTFDEEQKLMCSAPGCPKRWTVHLSGDRPKCSEHQWAKDPADYRRPIVAKPVPQTVQQWYEKEDF* |
| Ga0151517_111618 | F100705 | AGGA | MTKTQAHAILDRIKRKDRNPVSLAETNQALERTGDLCRAFSESLCAIGYEPSDYRPRQTHEQAAEVGFSYSKYLDCPTTESAT* |
| Ga0151517_111650 | F019101 | N/A | MLAQGAVSAIKQGCSMLHEGRMQLEGAKKTIEGVQADIKAIKGIWDWLLGLFVSKPAKPVDTPKPVAKAKAKKDESYEALELETIKNVGVQLGNFFDIQAQLNNYYASLEAESKERYDPTQNTSKKAIERALVELQMENLDAQIREQMTVYAPAELKAIYSRFLKMYARIQQEQEWARTEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF* |
| Ga0151517_11167 | F078402 | GGA | MSIAKEIFNLPEHQQLREDVKKFIVKQEILQTIQNCPMCAQHREAKNLWRKVALDLFTRQK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |