Scaffold Ga0151517_1041

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1041
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 60079
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (21.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F029414	Metagenome / Metatranscriptome	188	Y
F041771	Metagenome	159	N
F078286	Metagenome / Metatranscriptome	116	N
F093866	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_104140	F078286	N/A	MAKPEQYGAIADGKTNCAYAINECIRLHNICEFGEGTYIIGGKDIEPNDPLKVLKSGILWGWDPQQNESGVQLIGKGKGKTIIKLSEGLNGRRDLAVNNNQLIMVQAVGPGGDGREDCKNIVFKGITFDGNYDVINKVKGNELTIAGCTTFGSNTLYEDCEFKGFNVGKDNATSFIIISLLSTNSKDDAKGTTVRRCDFHSPGRNNRYPELDTEQIVHVQVGGSLSAKKFATECLIEDCTFRGDAGPTQFSPLAGISVANTKGVVIRNNNFDGFEGMCYYVDTGTNIDTIVEKNSAINVPCFIRLSAQNYVRQYGNEWWAVNYAYHHNLIVINNNVVTTGKGTWNWKPGKYAAWDGVFLAYSMDRDLPNMSSIFKNIIIQDNTINVDPTNLLKNLGGWWPPLNSYLPALPYGMVPNEPVINEIKLINNKNNFVVVVTKSISLFDKIKNFFKKIFKRK*
Ga0151517_104143	F093866	AGG	MNELSKIDMANLVFSNDKKAKIKDVLCSKYGATDVQYRDLTYGICIDVVGTDSFRFVKNAILKTLDVHEETLSILGESKRSMKASYVYLPEKDKVLNKRLKKMKTA*
Ga0151517_104146	F029414	N/A	MILLKDLLIESPSVLTVYRGVNPAYGDVGLGINSTKIGDKLVATLGPNHTDNLDVAKRFGKQIITTKLNEPGLELSHYNDIVNLYKQYENMLPPGLAKQIKYSSGQEQLDLIQLAGKQLRSILSKKYGYIKSPLAVSDANYLSQKGLTGDLYIPLR*
Ga0151517_104175	F012446	N/A	MKDIPEKFVKNCDLVGNNTFIQIKKEGNVYMYRRERMDGTIKSYEVFLGKFIAKGTPLPGGVVEKEDRIQYPGSAQFGKTAYDCKTEAQAEQRFEELLKKSANQAEAKEEAIKTGKPNKGRRGSSNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWQTDGLIKVNGSVKSEGKGRPATEYIVV*
Ga0151517_10419	F041771	N/A	MKIDVLKEFIKKTVQQEVRSVVQSEIKLQLAEIFSKEVLQAKKKSSDSDLEQQILKELETMNESVVEEPVKPAKKFVKYTSNPMLNDILNQTTGGIPQEGGMVNMMGGFGGTTQTTINETKVPENAPAPVKSVYSAMNRDYRSLMKAVDSKKSKV*