Scaffold Ga0151517_1002

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1002
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 320541
• Total Scaffold Genes: 407
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 265 (65.11%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Associated Families: 17

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F004053	Metagenome / Metatranscriptome	455	Y
F009512	Metagenome	316	Y
F011825	Metagenome	286	Y
F017466	Metagenome / Metatranscriptome	240	Y
F018925	Metagenome / Metatranscriptome	232	Y
F021290	Metagenome / Metatranscriptome	219	Y
F028709	Metagenome	190	Y
F029327	Metagenome	188	Y
F038982	Metagenome	164	Y
F043765	Metagenome	155	Y
F068392	Metagenome	124	Y
F078214	Metagenome	116	Y
F079586	Metagenome	115	Y
F102491	Metagenome / Metatranscriptome	101	Y
F102498	Metagenome	101	N
F102519	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_1002107	F102498	AGGAG	VSKQIQYAGYSILKDGTWKFRTATDEKRIFQLEAFGESVYMVSIRPVATKGAAAKELLAMDYMGKDPACVAFFVRHAKDENPFKPKKARTVKVKRSELAEDDDVKLTPKQAAKVRAEFCERVRVAYEAN*
Ga0151517_1002153	F078214	GGAG	MKRSDSPFQIWLQRIYMDHKDEANAYGFPTCDAATYFRMYKYWLKREYRHQQQNTAEL*
Ga0151517_1002156	F029327	GGAG	MGFYKDIEIEIMQWQARGRTQDETYIYFKDYVTQEDVARIFARDCDEETV*
Ga0151517_1002166	F028709	AGG	MKVELDQVYTMKIANGDEMVAKITAEDDSSFTVARPLTVVPGREGIQMIFSLFTANPDKSVTINKAQVALIAPARDEVQDSYVEATTGIKTVRNSKILMG*
Ga0151517_1002177	F004053	N/A	MLIREFAETRPNADKLVAITKFLVDRAKDESARKQISQDAYIQAAKSVGVELTPETLADLITQDPLKNLLEPLEPNSGVVRFKGDTEATTGMSVDQARAVVDSNAKAAMKRRQ*
Ga0151517_1002223	F017466	AGGA	MRAREFVAEAKFGSAADVPANGRKLAKSQHSAIKGAISMPDISSNKQGGSPYTQWRFGIAMAGAPDYPTPPAGAFAGDPLLATYSDADLKIINAAAKSVGAGEVKKLTDNRSTEADWVNKTSPVTGFGGYGR*
Ga0151517_1002225	F021290	AGGA	VRAREFVTEASRGGTRSTANHEFDQAHPGIIGPGGNGDVYWGRYYDFYRVSSLAGMDPDQIGKVDDIGFFGNLPVFSAYTEYDRKKLKAIMKKLGMNPRDHVLPGSLEAEYVNTTSPVKGFRGYAK*
Ga0151517_1002226	F018925	AGGA	MAANVYTTLANTTVYTDKLQISTAANAVTYQAYATALGTAAAIGNIYTAPITIPANTVFEGYSGAGNKVTIVGSPFTALELGTQSSAQYSVFNTAGQ*
Ga0151517_1002245	F009512	N/A	MEELYQRLDRAERQIATIQNKVARKDLLKMVRTIDSAMVAADMESVECRRLHRETNHYKELIQQAEDLITNLEQHLTFAALLGG*
Ga0151517_100229	F001443	GAG	MPMYETTVRTPEGERKDRVWARDLVEARMLLEQRHGPRNVPYIPHIVPS*
Ga0151517_10023	F102519	AGGA	MKRIVLALTCVLLSSCALLDAYLMAPYDANEYLQITEIRVMAGEYRQQCDNFQASSANAQDITRRTMTFERYSEFIPRNANGFKAARALNEIAQGLGTAYAKGIVSATFCRLKYNNLEHAAELIQRVTAGRPRK*
Ga0151517_1002322	F043765	GGA	MNYYYELDERTQKANLEQWHLWCMPNCSPAEGGRMCFKTHDDFMSNSRRVWLENANGVYLVKPHWGIYRGRVDDREFTMIKLRARTIKWWEDE*
Ga0151517_1002331	F038982	AGGA	MSKMSDFLKKAADKKKGIHHPENDDAPQVERKTVKQRAPVIGKKPPTRSAGRGR*
Ga0151517_1002339	F079586	AGGAG	MSTRIESRSSEIDTERCVAYAGGRYDLVIAAAQRLREMKRRARETNSWVTPIDALKEVQSGTFNMTDYLIKVK*
Ga0151517_1002353	F011825	AGG	MVNTMTVEQQKKPPVERYYYSEDEWARLGCGPLPPERDRARQLENVMARGNPPIDNNHIKGYN*
Ga0151517_100253	F068392	N/A	MLENLDVDQAIRMAILNLMAVLYDCGITEVHVGGIMRVLGVPDDKAAAHDLERVILDEDFVKYVDQVNTPRPVDQPLH*
Ga0151517_100266	F102491	N/A	MQVVDWPTWLERHIPYYEKQKQVDRYYDNPPASVLVVDPVDRNRRVGLRGFAWSTWEAMDADIRALRYRAEPVFLDNDTHQRWYWVFWDANEALMAVMRLS*