NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1002

Scaffold Ga0151517_1002


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1002 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)320541
Total Scaffold Genes407 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)265 (65.11%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Associated Families17

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F004053Metagenome / Metatranscriptome455Y
F009512Metagenome316Y
F011825Metagenome286Y
F017466Metagenome / Metatranscriptome240Y
F018925Metagenome / Metatranscriptome232Y
F021290Metagenome / Metatranscriptome219Y
F028709Metagenome190Y
F029327Metagenome188Y
F038982Metagenome164Y
F043765Metagenome155Y
F068392Metagenome124Y
F078214Metagenome116Y
F079586Metagenome115Y
F102491Metagenome / Metatranscriptome101Y
F102498Metagenome101N
F102519Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0151517_1002107F102498AGGAGVSKQIQYAGYSILKDGTWKFRTATDEKRIFQLEAFGESVYMVSIRPVATKGAAAKELLAMDYMGKDPACVAFFVRHAKDENPFKPKKARTVKVKRSELAEDDDVKLTPKQAAKVRAEFCERVRVAYEAN*
Ga0151517_1002153F078214GGAGMKRSDSPFQIWLQRIYMDHKDEANAYGFPTCDAATYFRMYKYWLKREYRHQQQNTAEL*
Ga0151517_1002156F029327GGAGMGFYKDIEIEIMQWQARGRTQDETYIYFKDYVTQEDVARIFARDCDEETV*
Ga0151517_1002166F028709AGGMKVELDQVYTMKIANGDEMVAKITAEDDSSFTVARPLTVVPGREGIQMIFSLFTANPDKSVTINKAQVALIAPARDEVQDSYVEATTGIKTVRNSKILMG*
Ga0151517_1002177F004053N/AMLIREFAETRPNADKLVAITKFLVDRAKDESARKQISQDAYIQAAKSVGVELTPETLADLITQDPLKNLLEPLEPNSGVVRFKGDTEATTGMSVDQARAVVDSNAKAAMKRRQ*
Ga0151517_1002223F017466AGGAMRAREFVAEAKFGSAADVPANGRKLAKSQHSAIKGAISMPDISSNKQGGSPYTQWRFGIAMAGAPDYPTPPAGAFAGDPLLATYSDADLKIINAAAKSVGAGEVKKLTDNRSTEADWVNKTSPVTGFGGYGR*
Ga0151517_1002225F021290AGGAVRAREFVTEASRGGTRSTANHEFDQAHPGIIGPGGNGDVYWGRYYDFYRVSSLAGMDPDQIGKVDDIGFFGNLPVFSAYTEYDRKKLKAIMKKLGMNPRDHVLPGSLEAEYVNTTSPVKGFRGYAK*
Ga0151517_1002226F018925AGGAMAANVYTTLANTTVYTDKLQISTAANAVTYQAYATALGTAAAIGNIYTAPITIPANTVFEGYSGAGNKVTIVGSPFTALELGTQSSAQYSVFNTAGQ*
Ga0151517_1002245F009512N/AMEELYQRLDRAERQIATIQNKVARKDLLKMVRTIDSAMVAADMESVECRRLHRETNHYKELIQQAEDLITNLEQHLTFAALLGG*
Ga0151517_100229F001443GAGMPMYETTVRTPEGERKDRVWARDLVEARMLLEQRHGPRNVPYIPHIVPS*
Ga0151517_10023F102519AGGAMKRIVLALTCVLLSSCALLDAYLMAPYDANEYLQITEIRVMAGEYRQQCDNFQASSANAQDITRRTMTFERYSEFIPRNANGFKAARALNEIAQGLGTAYAKGIVSATFCRLKYNNLEHAAELIQRVTAGRPRK*
Ga0151517_1002322F043765GGAMNYYYELDERTQKANLEQWHLWCMPNCSPAEGGRMCFKTHDDFMSNSRRVWLENANGVYLVKPHWGIYRGRVDDREFTMIKLRARTIKWWEDE*
Ga0151517_1002331F038982AGGAMSKMSDFLKKAADKKKGIHHPENDDAPQVERKTVKQRAPVIGKKPPTRSAGRGR*
Ga0151517_1002339F079586AGGAGMSTRIESRSSEIDTERCVAYAGGRYDLVIAAAQRLREMKRRARETNSWVTPIDALKEVQSGTFNMTDYLIKVK*
Ga0151517_1002353F011825AGGMVNTMTVEQQKKPPVERYYYSEDEWARLGCGPLPPERDRARQLENVMARGNPPIDNNHIKGYN*
Ga0151517_100253F068392N/AMLENLDVDQAIRMAILNLMAVLYDCGITEVHVGGIMRVLGVPDDKAAAHDLERVILDEDFVKYVDQVNTPRPVDQPLH*
Ga0151517_100266F102491N/AMQVVDWPTWLERHIPYYEKQKQVDRYYDNPPASVLVVDPVDRNRRVGLRGFAWSTWEAMDADIRALRYRAEPVFLDNDTHQRWYWVFWDANEALMAVMRLS*

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