Scaffold Ga0151517_1001

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1001
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 334901
• Total Scaffold Genes: 447
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 266 (59.51%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Associated Families: 18

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006141	Metagenome / Metatranscriptome	380	Y
F013393	Metagenome / Metatranscriptome	271	Y
F016150	Metagenome / Metatranscriptome	249	Y
F016374	Metagenome / Metatranscriptome	247	Y
F017466	Metagenome / Metatranscriptome	240	Y
F021050	Metagenome	220	Y
F021290	Metagenome / Metatranscriptome	219	Y
F021943	Metagenome	216	Y
F024263	Metagenome	206	Y
F024952	Metagenome / Metatranscriptome	203	N
F029985	Metagenome	186	Y
F030372	Metagenome	185	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044967	Metagenome	153	N
F046245	Metagenome / Metatranscriptome	151	Y
F050889	Metagenome	144	Y
F056408	Metagenome / Metatranscriptome	137	Y
F102401	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_1001114	F029985	AGG	MKKYGAIYRTVILVLLLILCGSAIVSSSPLYGGNQSSVAKEFKPKQVQLSAGAAECVRTAWIGDINNRTLICKEWRMLKGAK*
Ga0151517_1001120	F016150	AGGAG	MTEPKKSSNPFINMAMDAKKKNQELHPGLGRAPKKQGPKANTKGFGGANVTRRSARGG*
Ga0151517_1001132	F013393	N/A	MLSKKEFQMRHVSGFSNSTKIRYIVNGFGMYGTINDIYTKTATVSHGEALRLAIQKLAYDRRHSSFKDEGRPVGVSITHEGIQVQIDLMAN*
Ga0151517_1001138	F102401	AGG	MKHFLIIAAIVSVTAWAQVPVHASADHSVRAHLPRVPRVKLLRSNPHRFTAIRLQGTNPYDAPDDDFLCSSSSRRPKVAPPTDSVDDELSEYVQVRLAVARARAMARYRELHA*
Ga0151517_1001144	F030372	GGA	MNKQTKELAEQAGFVLDELPDTVLLPLETFADLLIAANTREVVALCANTINLNLNEQKQKTKRRWDIIEAIVIILLLIVWGAWWYFRLHT*
Ga0151517_1001166	F044967	AGGA	MIKAPETKTRDRFDLEQEILECWKITQDITMFIEQGAVAEQFQVLAEYYEHKFDRLWNTFESMVHERKM*
Ga0151517_1001181	F050889	N/A	MEMKNLYSAPEARLDTILGEVSFWAQMQRCRTSEEGEKNCTTGADTITWFRDTWGIQLLPSDDTIFGFQRGVNIVDEQKYMIFLLKWA*
Ga0151517_1001196	F021050	GGA	MKIDWNVNSVIYECQKMYQGATDPYVTGWNNWPCKQDLYRVKFAVDEMLRNTGTFSGEAEWLEEQEKQRMWKVLNGTN*
Ga0151517_1001285	F056408	AGG	MGQTLDERFKETWSTMTPEDLERFVKHFAELLICDCADVAYRFDGVTLGQGYTIAKHIKKNYEIEL*
Ga0151517_1001287	F030663	GGAG	MYELIFTFLVVTKAGLPGFHMERMSQFREIEDCEKTKTAMVAYMDRLVRENKMFPGVFECQKVQR*
Ga0151517_1001288	F016374	AGG	MNREITLTPEGGRFYRAMTFHWVTVAICLPPLMALMIVAILNPLWFRDSMFNWVERQVNAFTRWRNNVKYRIYLNCDPVVWHTLKGDLK*
Ga0151517_1001324	F046245	AGG	MLDYIITFVAVFATDLIYILFVKSIQDNQPWRAAWWSMVCTLTASVAVINYIENHWALIPALAGAFFGAYVGMKYKKKIISD*
Ga0151517_1001437	F024952	N/A	MTQQYQTYAETMSRLAERHPPAPTPAEVRNQPAMIPGVLSQTTNLFRPVAVADLNKELK*
Ga0151517_1001439	F021290	N/A	MRAREFITEGAGKRGGTRAAASHEFETAHPGIVGPGGKGDVYWGRYYDHYRVATLAGMDLEQLENSSDINFFGNLPIFSAYTEHDRKKLTAIMKKLGMKPRDSISNGSHEPDYVNHTSPVTAFKGYAR*
Ga0151517_1001441	F017466	N/A	MRAREFVAEARFGSAQDVPADAKKLPKSHASAIKGAISMPDISMTKQGGNPYTQWRFSLAMAGAPDFPTPAAGAFAGDPLLATYTDVEMDIINAAAKSVGAGRVNKLTDNRSREADYVQKTSPVKGFKGYPR*
Ga0151517_10017	F021943	N/A	MRTALDTELFPDLCEVVEIPLHSQWVYLIQKNGNSSLRRQQARDNLNVFANDQIRALDYVDVYIRNPRARYVSGVNTYLQHLQRDHPELDFSTAFWFAKRYKFLNTHYLPQFHWLANLSRYMHSDAKIRLRNFKDFAKIADYHDRAMVLDPTSEFVNSLLKDNNHLELWLFLDQILLDLAGQEFSWSQLLEYYKCNHMNIIQNVLPKT*
Ga0151517_100188	F006141	AGGA	MILEIFLAGMITAFGWWTSTHYIIEPYFPPPIEKKVEQK*
Ga0151517_100194	F024263	AGGA	MSVKIEATDSMLQSLDSLRTTALPMHKLYFELSSVDAWYAIMREARAQFGQNWRCQRHVKRRLERAHIWNPPGTAERVWFEVPDPAFGTWVAIKHAVRVVGAPINKDL*