NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138564_1045179

Scaffold Ga0138564_1045179


Overview

Basic Information
Taxon OID3300011086 Open in IMG/M
Scaffold IDGa0138564_1045179 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029009Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0138564_10451791F029009N/AVSNGVNEVFGSTLPNYSEVLLWNGAGFSVALYDPTDPDGLGAGAPVWYKGDDATVLSSLPTVPPGVGFFLVPGGNTTNVFAGAVALNVGTSNNMPLIAGKNNLVACVVPYAGAVTNGNSSTGGPNLNGLPNFTELLFWNGSGYSPALYDPTDPDGLGASAPLWYKGDDATPYVDPTTGGNVPNIAVGQGFFIVPGGAYTWTVGL*
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