Scaffold Ga0138584_1137797

Overview

Basic Information

• Taxon OID: 3300011073
• Scaffold ID: Ga0138584_1137797
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 557
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011066	Metagenome / Metatranscriptome	295	Y
F022960	Metagenome / Metatranscriptome	212	Y
F056379	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138584_11377971	F022960	N/A	VVPQHRFLGGGGVQPVLGHANTLANITDLSGEVERRFLPGLKAGVSTSQS*
Ga0138584_11377972	F011066	N/A	MTNTEDVQRYADAIMAMIKEDQDTGQVPRNVCSWDELDDSVDAADYYRLAGMPSVIRDATALRDAVNEEVGRRLARAGGGRSGSPSG*
Ga0138584_11377973	F056379	GGAG	MRPRSRLPRGALIATGPVVLVVVGIAGYLSFGYSPWMAVAMTLLTLT