Scaffold Ga0114934_10015325

Overview

Basic Information

• Taxon OID: 3300011013
• Scaffold ID: Ga0114934_10015325
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4344
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4914
  • Depth (m): 482

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026394	Metagenome	198	Y
F075322	Metagenome / Metatranscriptome	119	Y
F101849	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114934_100153254	F026394	N/A	MTATPKKLSPKPVRKTSEEQLPVVITKQRDFTHKEPIIIPSHLEEVPVISAASYIKDARNRWYIHNVELKETWDVHVNLFNKVKPHVLEAHEYVVNRYQELTAKD*
Ga0114934_100153255	F075322	N/A	MDDFKKYEFTIKVKTNHDPRQAIFEIVDALKGMLPVLSIEHRLVEDRPTSDEHHGGVTNDGST*
Ga0114934_100153256	F101849	N/A	MPKYHVTLSSGRDFIMEHDGTEYDIAYDSYEEACLMDDYLVDVELIPDA*