Scaffold Ga0139557_1023206

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1023206
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1124
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052598	Metagenome	142	N
F058151	Metagenome / Metatranscriptome	135	Y
F074407	Metagenome / Metatranscriptome	119	Y
F099316	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10232061	F052598	GAG	MIPTFKLTVTDEFHSDFVYETNDKEEVLDRVALWLAQLDNTPIYN
Ga0139557_10232062	F058151	GGA	MWRKREIMELQDKPSISTLVDNVPTDVSGKWVKKEELYPFASAVADYVLTRVEKNINDSDL*
Ga0139557_10232063	F099316	GAGG	MWRIRKMGDENGYIVRNKELAVQLLDQFNRKGGVWEMVEITEYKLGDPMEQ*
Ga0139557_10232065	F074407	N/A	MNKKIKALAIEAGLYVDFNGEPWPKNMTGEDIEGAYEKFALLLIDECAKKVDKVRRQGGWFYGEIIRKEFGFYDKKSS*