Scaffold Ga0139557_1008514

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1008514
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2065
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F104718	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10085142	F011223	GGAG	MSKIQIQLVEDEETPTVFERFWDNLMTFVKCVGVFAAICLAIGYFSDTKAQSKQCEPTKTVLTKSIFK*
Ga0139557_10085144	F104718	AGCAG	VVVIMSEPMQKEIDAIVAMMAPPPSSAGLLTARDVQDIVRRAASKGALVGWLAAEKDVKERAGRALAQLEYENQNNKDRIKELELEIIGLQQ*