NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1002502

Scaffold Ga0139557_1002502


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1002502 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4094
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010540Metagenome / Metatranscriptome302Y
F030987Metagenome / Metatranscriptome183N
F035185Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10025023F035185N/AMGMSFEFDEDEGEFSINYHKVLHQETFLPITRLLAADLIKSQYMSIGDFIKSLKDNSLEELNEISEDENHSHFEEIILISEMLAAAEGTNLGGTPEVHQRLNMFMTWLIFESLKRKGLVKIHYENLSFGDDMADKIVVEKIDFN*
Ga0139557_10025027F030987AGGMKMQTAIKQIQKECDFMGLGFVEVLEDIQKHGKMLYCEKTMDAYQTVITNGQFFNESPIDIALYNKDMMEME*
Ga0139557_10025028F010540N/AMKIRAIVNGVSFYTTRADIKNRRVGDFVLQNDALAYALETMGKSIGIGTTVRYYDHKMVQHKFDIQLNRV*

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