Scaffold Ga0139557_1002502

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1002502
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4094
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010540	Metagenome / Metatranscriptome	302	Y
F030987	Metagenome / Metatranscriptome	183	N
F035185	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10025023	F035185	N/A	MGMSFEFDEDEGEFSINYHKVLHQETFLPITRLLAADLIKSQYMSIGDFIKSLKDNSLEELNEISEDENHSHFEEIILISEMLAAAEGTNLGGTPEVHQRLNMFMTWLIFESLKRKGLVKIHYENLSFGDDMADKIVVEKIDFN*
Ga0139557_10025027	F030987	AGG	MKMQTAIKQIQKECDFMGLGFVEVLEDIQKHGKMLYCEKTMDAYQTVITNGQFFNESPIDIALYNKDMMEME*
Ga0139557_10025028	F010540	N/A	MKIRAIVNGVSFYTTRADIKNRRVGDFVLQNDALAYALETMGKSIGIGTTVRYYDHKMVQHKFDIQLNRV*