Scaffold Ga0139557_1000898

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000898
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7041
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025214	Metagenome	202	Y
F029105	Metagenome	189	Y
F056574	Metagenome	137	Y
F093233	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_100089810	F093233	N/A	MHTCPELLGVFLGEIKMRKQIKITEVYLQQEYFNHRLNCTIPAAWIAVFNNGHEVAICREWEASTAEDAQAYYEMHHVEFA*
Ga0139557_100089811	F029105	AGGA	MTDLKLQYYFDDVVSYDNGNTDENVKVGYDYLPAQHNHPYDYDYAEMFDVFVFDAQGKHITYDIPNDEYKRLMDEAKRNFYTCKAK*
Ga0139557_100089816	F056574	AGGAG	MSTFFDNMNEIVGRFFGTEPFKMVRKEDPDTSKDAAEKVDSTKLEQMVYEVIAKYPNGCIADDVMTHFPSHGIQTISPRYAPLIRKGFIQDTGERRKSSTGRSQRVMKVIKC*
Ga0139557_10008985	F025214	GAGG	MTTNPCWTKDGKAKNLALLTSTEHCEMLETLSLTEAKEWIKRYRKKRLELDKQEAQAWWESVKVDIKKKRGQDGHDTLITNMRQQNEKSRTG*